Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2485 ATGGAGAGCGACACGCTTCTTCCTCACACCACCGTTTCTTGGACCGAACACAGCAATGACATTGGAATTTCCATGAATGCCCCTCTCACTTCCTTCAAATCCATACTCCAACCTCCTCCAATTACCATAAACCCCTTCCCGTTCCCACAACAACATACCGTACCCACTCTCACTACTACTGCTGATCATGACAACTTTCTGACACACCAAAACATGGACTCCTTCGCTCCAGAACACTCTTTCTTTACTCCCAAAGCCTCTTTCTTCAACAACAATCCTTTTGATAATGCCTTCGATTTGGGACCTGACACCGCTTTCTTCTTCTCCGGGAACCATTCTTCTCAAACTGGCTCGCCTGACATGAGTTCCGGTACCGAATTCCCGCCGGCGACTCGGCTGCTCCCGGCGGGGGCTACCGACGATGATCCCATGGCGCTGGGTGCTGGATTTGGTGCCTCCGCTGCGTTTGAAATGGAAGCAGTTGGTGGCTCTGGAAACGCTCTGTTTTCGAGCAGGGGAAAGGGATTGGAAGCTTTGGAAGTGAGTAATTTGAAGAGGGTGCAGGAAGTTGAAGAAGCTAGCAATGAGGGTTCAATGTGGAATTCTGAAGAGGATGATGAGAGAACTGATGAGGTGGTGGTCGAGGAGAGTGGGAAGAAGAAGAAGAAGGGGATGCCGTCCAAAAATCTTATGGCGGAGAGGCGGCGAAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAATATTAGCAAGATGGACAGAGTTTCGATACTTGGAGATGCAATTGACTACATGAAGGAGTTACAGCAGCGGGTCAATGATCTTCAAAATGAACTGGAGTCAACTCCAACTAGCTGTTCGCCATCATCTTCCACCAGCATTCAACCTTTGACACCCACACTGCAAACCCTTCCATGCCGGGTGAAGGAAGAACTGTGTCCGATGCCAATCCCAGGAAACCAAACAGCAAAGGTGGAAGTTAAGGTAAGGGACGGCAAAGCTGTCAACATTCACATGTTTTGTAGCCGCCGACCAGGTCTTCTGGTCTCTACAATGCAGGCTCTGGATAACTTCGGATTAGATGTTCAGCAAGCTGTTATTAGCTGCTTCAATGGTTTTGCTTTAGACATCTTCAAAGCTGAGCAATGCAGAGAAGGGCAGGATGTGCTTCCTGAGGAAATCAAAGCAGTTCTGCTGGATTTAGCAGGTATCCATGATATGATGTGA 1242 0.4847 MESDTLLPHTTVSWTEHSNDIGISMNAPLTSFKSILQPPPITINPFPFPQQHTVPTLTTTADHDNFLTHQNMDSFAPEHSFFTPKASFFNNNPFDNAFDLGPDTAFFFSGNHSSQTGSPDMSSGTEFPPATRLLPAGATDDDPMALGAGFGASAAFEMEAVGGSGNALFSSRGKGLEALEVSNLKRVQEVEEASNEGSMWNSEEDDERTDEVVVEESGKKKKKGMPSKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRVSILGDAIDYMKELQQRVNDLQNELESTPTSCSPSSSTSIQPLTPTLQTLPCRVKEELCPMPIPGNQTAKVEVKVRDGKAVNIHMFCSRRPGLLVSTMQALDNFGLDVQQAVISCFNGFALDIFKAEQCREGQDVLPEEIKAVLLDLAGIHDMM* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2485 413 MobiDBLite consensus disorder prediction 190 229 - -
Amo06g2485 413 SMART finulus 230 279 IPR011598 GO:0046983
Amo06g2485 413 Coils Coil 263 290 - -
Amo06g2485 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 293 IPR036638 GO:0046983
Amo06g2485 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Amo06g2485 413 Gene3D - 214 288 IPR036638 GO:0046983
Amo06g2485 413 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 191 413 - -
Amo06g2485 413 CDD bHLH_AtAMS_like 227 285 - -
Amo06g2485 413 Pfam Helix-loop-helix DNA-binding domain 231 274 IPR011598 GO:0046983
Amo06g2485 413 PANTHER BHLH TRANSCRIPTIONAL FACTOR 191 413 - -
Amo06g2485 413 CDD ACT_UUR-ACR-like 342 383 - -
Amo06g2485 413 MobiDBLite consensus disorder prediction 212 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2485 Amo-Chr6 87238130 87247650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2485 92 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.163 1.90e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g2485 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2485 - - ahf:112697118 756.903