Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2476 ATGCCAGCTTTGATGCCATCTAGGTTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGGGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACACAAGTATTTATTGTATGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCAAATGTTAGTTTCCAAAGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGTAAGGTAAAGCCATTGTTGGGTTCATCCCTGGGGTCCCTTAAGAGCAAAGGCATAGGGAAACTTATTGGTTCCAGTGAGAAGAAGAAAGCGTTCGAGATTGTTGAGAGGAAGAAACAACAAATCAAGGCTGCCCCATTTGCAGTAAAATCGTTCTCTGAACTTGGGTTGCCCCATGTTCTAATTGAGAGACTTGAGAAAGAGGGGATCAGTGTTCCAACTAGGAACCATGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGAAATTGGCTTATCTTCTTCCTATACTATCATCTATTGGTCCACTGATGAACAAAGTTTCCAAGAGTTACAGTGGTGGTAATTCTGGTGAGAAAATGGGAGTAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGATTTTAAGAAGATACTAGGAGTGGAGAACAAGAAAGTGCTCTTGTCATTCAATTTTCGGGTGGACATGCACCGGATATTGCAGCATGTAGGCAGGAGATCAGGTGCAGACCTGGATCCAAATGTTAAAGGGACTGGGCGTCAATTAATTATAGTGTCTGCAACTGTTCCGTTTTCTGTTGTAAGAGCAGCGAGAAGCTGGGGATTTATCCCGCTTGATACTGTTTCGCCTTCGAGCCATATCAATTTGTCAAGGCCTTCAGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCTGTTTTTGAAACACTATTACTGTGTAGCGAGGTTACAGCACAAGGTCGATACCATGAGAAAGTGTATTCATGCCCTGGATGCAAAAGTTGTAATAGCTTTCATGAACAACACTAAGCAACTAAAGGATGTCGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGACAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGACGAGGTGAGAGTTCTTGTGACAAATGAATTATCAGCTAGAGGTTTGGATGTGGCAGAATGTGATCTCGTGGTTAATCTGGACTTACCTACGGATTCAAGTCACTATGCACACCGAGCATGCCGAACTAGTCAGCTTGGTAGGGATGGTATAGTGCTAACCATATGTGAAGAGTCCGAAGTGTTTATTATGCTTGTCAACCAAAAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 1419 0.4362 MPALMPSRFLLVGESFPIRRALATHKNASSLLHTSIYCMSQVEPPNHGSLTLSNVSFQSEVDKPINKGGKSSSKVKPLLGSSLGSLKSKGIGKLIGSSEKKKAFEIVERKKQQIKAAPFAVKSFSELGLPHVLIERLEKEGISVPTRNHDVIIQSYTGSGKKLAYLLPILSSIGPLMNKVSKSYSGGNSGEKMGVEAVVVAPSRELGMQIVRDFKKILGVENKKVLLSFNFRVDMHRILQHVGRRSGADLDPNVKGTGRQLIIVSATVPFSVVRAARSWGFIPLDTVSPSSHINLSRPSVGSTPDPTKPSQASVESLPLFLKHYYCVARLQHKVDTMRKCIHALDAKVVIAFMNNTKQLKDVVFKLEARGMKATELHGDLGKLARSSTLKKFKNDEVRVLVTNELSARGLDVAECDLVVNLDLPTDSSHYAHRACRTSQLGRDGIVLTICEESEVFIMLVNQKEKALSTSRK* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2476 472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 286 IPR014001 -
Amo06g2476 472 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 21 225 - -
Amo06g2476 472 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 226 458 - -
Amo06g2476 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 230 IPR027417 -
Amo06g2476 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 457 IPR027417 -
Amo06g2476 472 Pfam DEAD/DEAH box helicase 146 222 IPR011545 GO:0003676|GO:0005524
Amo06g2476 472 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 21 225 - -
Amo06g2476 472 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 226 458 - -
Amo06g2476 472 Pfam Helicase conserved C-terminal domain 339 438 IPR001650 -
Amo06g2476 472 Gene3D - 320 471 IPR027417 -
Amo06g2476 472 CDD SF2_C_DEAD 321 450 - -
Amo06g2476 472 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 472 IPR001650 -
Amo06g2476 472 Gene3D - 91 227 IPR027417 -
Amo06g2476 472 SMART helicmild6 360 444 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2476 Amo-Chr6 87133175 87134887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2476 121 458 Eukaryotic Initiation Factors Gene Family AT3G19760 21.134 6.67e-20 89.7