Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2474 ATGCTTCCAGCAAGGTCTCATCCTCTTTCTTGGACGGAACCCTTACTTGCAGAAGACAGCACTGACATTGGAATTCCCATGAATGCCCCTCTCACTTCCTTCAAAACCATACCCCAGCCTCCTCCAATTACCATAAACCCCTTCCCCTTCCTCACTGCTAACACTAACGATAACAACTTCCTCACGCACCAAGGAATGGACACTTTTGCCCTCGAACACTCTTTCCCTACTCTCAAACCCTCCTTCTTCACCAACAACAACAATCCTTTTGATAATGCCTTCGATTTGGGACCTGACTCCGGTTTCTTCTTCTCCGGCAACCATTCTTCCAACTCCCCTCTTTTGATGGCTTTCTCTCAGCCTCTAATTGGCTCGGCTGACATGACTTCCGCTACTGAATTCCCGCCGGCGACGCGGTTGCTCCCGGCGGGGGGCGCCGACGATGATGCGGTGGCGCTGGGTGCTGGATTTGAAATGGAAGCGTTTGCGGCTTCTGGAAATGCTCTGTTTTCGAGCAGGGGAAAGGGGTTGAGGCCTCTTGAGGTGGCTCCGACGGTTGGTGCGCCTCCCACGCTCTTCCAGAAGCGTGCCGCGCTCCGGCGAGGCTCCGGCGGGGCTGAGAGTCTTGAAGCTTTGGGAATGGGGAGTTTGGAGAGGAAATGGGGAGAGGGGGAAGTTGAAGAAGGTAGCATTGAGGCTTCAGTGTGGAATTACGATTCTGATGAGAATGTTGAGAGTGGTAGTAAGGCTGTGGTGGTGGAGGAGAGTGGGAATCATAGCGGCGGAGGGAATGGGAATTTGAGCTTGAGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAAGGGATGCCGGCGAAGAATCTCATGGCGGAGAGGCGGCGCAGGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTGCAGCGGATTAATGATCTTCACAATGAACTGGAGTCAACTCCACCTGGCTCTTCGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCCGCAAACCCTTCCGTGCCGGGTGAAGGAGGAACTGTATCCTGGCGTCTTGCCAAGCCCCAAAAACCAACCTGCAAAGGTGGAAGTTAGGGTGAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACTCGCCGACCAGGTCTTCTGCTCTCAACCATGCGGGCTCTGGATAACCTCGGATTAGATGTTCAGCAGGCTGTTATTAGCTGCTTCAATGGCTTTGCTTTAGACGTCTTCAGAGCCGAGCAATGCAGAGAAGGGCAGGATGTTCTTCCTGAGGAAATCAAAGCAGTGCTGCTGGATTCAGCAGGGATCCATGACATGATGTGA 1431 0.5241 MLPARSHPLSWTEPLLAEDSTDIGIPMNAPLTSFKTIPQPPPITINPFPFLTANTNDNNFLTHQGMDTFALEHSFPTLKPSFFTNNNNPFDNAFDLGPDSGFFFSGNHSSNSPLLMAFSQPLIGSADMTSATEFPPATRLLPAGGADDDAVALGAGFEMEAFAASGNALFSSRGKGLRPLEVAPTVGAPPTLFQKRAALRRGSGGAESLEALGMGSLERKWGEGEVEEGSIEASVWNYDSDENVESGSKAVVVEESGNHSGGGNGNLSLSGGVNGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQRINDLHNELESTPPGSSLQSSTTSLQPLTPTPQTLPCRVKEELYPGVLPSPKNQPAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEEIKAVLLDSAGIHDMM* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2474 476 SMART finulus 290 339 IPR011598 GO:0046983
Amo06g2474 476 MobiDBLite consensus disorder prediction 342 367 - -
Amo06g2474 476 MobiDBLite consensus disorder prediction 254 288 - -
Amo06g2474 476 CDD ACT_UUR-ACR-like 405 465 - -
Amo06g2474 476 Pfam Helix-loop-helix DNA-binding domain 291 333 IPR011598 GO:0046983
Amo06g2474 476 PANTHER BHLH TRANSCRIPTIONAL FACTOR 59 476 - -
Amo06g2474 476 Gene3D - 278 347 IPR036638 GO:0046983
Amo06g2474 476 CDD bHLH_AtAMS_like 287 350 - -
Amo06g2474 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 353 IPR036638 GO:0046983
Amo06g2474 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Amo06g2474 476 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 59 476 - -
Amo06g2474 476 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2474 Amo-Chr6 87089928 87093758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2474 48 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.245 6.99e-128 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g2474 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2474 - - aip:107647300 790.03