Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2462 ATGATTGGACTCAACTCTTCTGTTCAAATGCTTCCTGCAAGTATTCAAACCAAAGGAAATCAAATCTACTTTACAGATAACCTACTAAAATTGAAAGCAGTGGACTATGCGGAACATCAAGATATTGGCATCTTCGACTTGGACGATGGAAGTTGTCAGAGACTATTATCCGATAACTCAGCCAGTAGTGACAGAGGAGTTGATTGGTTAGTTATGATGAAATTAGCTGCTGGTTCACTAGAGAATGCCCATCATGAGGAGATTCAGACACCTGCACCTGACAGTAGAGCAGTTGGCGATGATCCTTCTCACCCGGCTATGCTAACATTTAAGTGTGGGGAGGTCAAAAAAAAAGACCAGACCTTTTCCCTTGCTGAGTTTACTGCCGCCAAAACCGACTACCAAGATCCCATCGTGCTCCCCATCGGTCCGCGCCAGCGCACCGCCGAGGAGCTTGACCGCGACCGTAACCGTCTTGGCGGCGGCTTCAGGAACTACGGCGGTGACCGCGCCAACAGAAGCTCCGGTGGTGGTGATGATTCCTCCAATTCGAGGCTTGTTTTGCAACCTCGAACAACGCCTGTGAACAATGAGAGCCAGGAGGGTGCTGGTAATGGTAATGTGGTGAAACCAAAAGGTCCAAGCCCATTCGGCGAGGCAAGACCGAGGGAGGAGGTGCTGGCGGAGAAGGGGCAGGATTGGAAGAAGATTGATGAGCAGCTTGAGAGCATGAAGATCAAGTCTCCAACCAAGTATGGGCGGCAACCACCACCAGTGTTAGAGGAAGAGTATGTGAAAGAGGTCCTATCAAAAACACCCATTGCCAAACGAAATCAAGTTCCAAATTTGAAGTCAGAATTGGACACCCTTCTGTCTCCTCTTCAAAACCCTAATGAAAAAATCGAATCAAAGAACCCACATCCCATTCCAAACCCCATTATCATCAACAAAAAAGAAGGTGAAGTCTCAGAGGTAGTGTCTCAGCTCTCAGAAGAACCATGCAGCATCAGCAGAAGCTTCTTCACCGCTACCACAGTTACGGAGAAAAGAGAAGAAGAAGTAACCAGCAAAAGAAGCATCAGGGAGGGAACAACAACAATGATGAAGAATCATAAGTGGAACAACAACAGATCCCCGTCGAGGAAGCGCCCTCACACCTGTGATGGCAATGTCACCTCCGGGAGGAAGCAGAGT 1194 0.4816 MIGLNSSVQMLPASIQTKGNQIYFTDNLLKLKAVDYAEHQDIGIFDLDDGSCQRLLSDNSASSDRGVDWLVMMKLAAGSLENAHHEEIQTPAPDSRAVGDDPSHPAMLTFKCGEVKKKDQTFSLAEFTAAKTDYQDPIVLPIGPRQRTAEELDRDRNRLGGGFRNYGGDRANRSSGGGDDSSNSRLVLQPRTTPVNNESQEGAGNGNVVKPKGPSPFGEARPREEVLAEKGQDWKKIDEQLESMKIKSPTKYGRQPPPVLEEEYVKEVLSKTPIAKRNQVPNLKSELDTLLSPLQNPNEKIESKNPHPIPNPIIINKKEGEVSEVVSQLSEEPCSISRSFFTATTVTEKREEEVTSKRSIREGTTTMMKNHKWNNNRSPSRKRPHTCDGNVTSGRKQS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2462 398 MobiDBLite consensus disorder prediction 349 398 - -
Amo06g2462 398 MobiDBLite consensus disorder prediction 360 374 - -
Amo06g2462 398 Pfam Plant specific eukaryotic initiation factor 4B 169 250 IPR010433 GO:0003743
Amo06g2462 398 Pfam Plant specific eukaryotic initiation factor 4B 81 181 IPR010433 GO:0003743
Amo06g2462 398 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 170 251 - -
Amo06g2462 398 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 80 182 IPR010433 GO:0003743
Amo06g2462 398 MobiDBLite consensus disorder prediction 175 204 - -
Amo06g2462 398 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 170 251 IPR010433 GO:0003743
Amo06g2462 398 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 80 182 - -
Amo06g2462 398 MobiDBLite consensus disorder prediction 141 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2462 Amo-Chr6 86887390 86893653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2462 150 247 Eukaryotic Initiation Factors Gene Family AT4G38710 49.091 4.91e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2462 - - aip:107612529 202.601