Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2457 ATGTTGGGTTTCCGCAATGCCACGAATGTTGTTCTCCGCCTTCGTCAAAACCTTTCCGTTTGGGGCGTGCGTGCACAAAATATAAACATAGGAGGTGGTGTTGGAGGTGAAATCCCTGACCAGAAGCGCCTCCAGTATGCTCTTCAGCATATCCATGGCATTGGGCGTTCCAAGGCTCATCACATTGTCTGCGAGCTCGGTGTCGAGAACAAATATGTTAGAGACCTTAGCAAGAGAGAGTTGTACTCCCTTCGCGAATTGCTTTCCAAGTACTTGATTGGGAATGATTTGAAAAAATGTGTTGAAAGAGATGTGGGGAGGTTGGTGGGCATTCAGTGCTACAGAGGCATCAGGCATGTCGATGGCTTACCCTGTCGAGGCCAGCGAACTCATACCAATGCCCGCACCAGGAAGAGCAGGCCTACTTGGAGGGGAACAAGATGA 444 0.4977 MLGFRNATNVVLRLRQNLSVWGVRAQNINIGGGVGGEIPDQKRLQYALQHIHGIGRSKAHHIVCELGVENKYVRDLSKRELYSLRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDGLPCRGQRTHTNARTRKSRPTWRGTR* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2457 147 Gene3D 30s ribosomal protein s13, domain 2 99 138 IPR027437 -
Amo06g2457 147 ProSiteProfiles Ribosomal protein S13 family profile. 34 139 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo06g2457 147 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 8 142 - -
Amo06g2457 147 Hamap 30S ribosomal protein S13 [rpsM]. 22 146 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo06g2457 147 Pfam Ribosomal protein S13/S18 35 136 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo06g2457 147 Gene3D - 34 98 - -
Amo06g2457 147 SUPERFAMILY S13-like H2TH domain 35 139 IPR010979 GO:0003676
Amo06g2457 147 MobiDBLite consensus disorder prediction 128 147 - -
Amo06g2457 147 ProSitePatterns Ribosomal protein S13 signature. 115 128 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo06g2457 147 MobiDBLite consensus disorder prediction 131 147 - -
Amo06g2457 147 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 8 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2457 Amo-Chr6 86775572 86778999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2457 23 139 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.369 4.43e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2457 K02952 - gmx:100527465 236.498