Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2454 ATGGTTCCGAAGACGGAAAAGAGCTCTGATTTCGAAATGCCGGCGAGGAACAGTGACGAAACGGTAGAGAAGAAGAACGTGGCGAAGGACATGTCGGTGCAGCGCAGAGCCAGTGCGAGAATCCAAGCGGCGAAGCAGAAGGCCGAGGAGGAGCTTCATGCTCGCCGTGGAGCGGTGGTAGTAGAAGAAGAGAAAGAAAAAGAGGAGAAACGTGTGAAAGTGGCGAAGAAGTGGAGCAAGAAGCGCGTGAGGAATGGGGAGTACTTGGGAGAGGGAGAGGTTGTTGTTGGCGTTGCTTCCCCAAAGAAGGGGAACAATGACAGCGGAAACGAGGAGGGTGTTGGCGAGGGAGAGGGAGGTGTTGCTCCTTCCTCGGCGAAGAAGCCGAAGAGGCGGCCGTTTATGCAGGATCAAAATGGAGTAGGGGATTCTGAGAATGCTGTGGCTAATTCTGCTGAAAATAAAGGAGCTGCCTTAAGGGTGAAGGAGACTATTAGGGTCTACAACAAGCATTACCTTCATTTTGTTCAGGAGGAAGAGAAGAGGTGTGGGAAAGCGAAGGCTGAATCTGAAGCTGCTAAGAAGTCAAAGTCTTCAAAATCGAAGAAAGCGGGACCACTTGAAGTTAAGAAAACTCATCAGCGACCTGATCTAAAGGCACTATCCATGATGATGACGAATAATGAGATTTTGTACCCCGAGAAAAGAATTGGTGACCTTCCAGGTATTGAAGCTGGACATCAGTTCTTTTCTCGAGGTGAAATGGTTGCTGTTGGTTTTCATAGTCATTGGTTAAATGGGATTGATTATATGGGCAAATCCTATGGCAAAGTGAACAGCATTTATGAATACCCTATTGCCGTGGCCATTGTTTTGTCGGGCCAGTATGAAGATGATGTTGATAATGCTGATGATGTTGTGTATACTGGTCAAGGTGGGCATAACTTGACAGGTGATAAGCGCCAAATCAAAGACCAAAAGTTGGAGCGGGGTAACTTAGCACTCAAGAATTGCATAGAGCAAGATGTGCCTGTTAGAGTGATCCGTGGTCATAAATCTTCAAACGGTAAATCTTCAAACGGTAAATCTTCAAATGGTGCTACTAAAATCTATACATATGATGGCTTGTACAAGGTGATCAAGTATTGGGCAGAGAAGGGAATATCTGGATTTACAGTCTACAAATTTCAACTTAAGAGAATTGAAGGGCAGCCATTAATGACCACAAATCAGGTTTATTTCACTCGTGGACGTGTACCACAGTCTACTGCAGAAATACGAGGGTTGGTATGTGAGGATATAACTGGAGGTCAAGAAAATATTCCAATTCCTGCTACAAATTTGGTTGATGATCCCCCTGTTGCACCAACGGGTTTTACGTATTGCAACTCTGTTAAGGTTGCAAAAAATGTGAAGTTTCCCAAGGCTGCCACTGGATGCAAGTGCAAGGGTGTCTGCATTGATTCTACGACATGTGAATGTGCATTGCGAAATGGCTCTGAATTTCCCTACGTAGCTCAAAATGGTGGCAGGTTAGTTGAAGCTAAAGATGTTGTCTTTGAATGTGGTCCCAACTGTGGCTGTGATGAGACTTGTGTGAACCGGACTTCACAGAAAGGGATTCGATATCGTCTGGAGGTTTTCCGTACTGCAAAGAAAGGGTGGGCTGTTAGATCATGGGATTTTATACCAGCTGGTGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGGACTGAAGACATGGACAGTGTATTAGAGAATAATTATATTTTTGAGATAGATTGCTTACAGACAATCAAGGGTCTTGGTGGAAGAGAGAGGCGATCGCAAAGTGGTACATTTCCATCAAATCTTTTGGATAAATATGATGACCATGGTTCAGATGGTGCACCAGAATACTGTATCGATGCTGGACCTACTGGAAATATTGCTAGGTTTATAAACCACTGTTGTGAGCCTAATTTGTTTGTTCAATGTGTCTTGAGCACCCACCATAACTTGAAATTTGCACGGGTAGTGCTGTTTGCTGCTGACAACATACCCCCACTGCAGGAGCTGACGTATGACTATGGTTATGAGCTTGATAGTGTATTGGGTCCCGATGGAAAGGTCAAACAAGTGACATGCTACTGTGGAGCTCCAGGTTGCAGGAAGCGATTATTCTAA 2169 0.4481 MVPKTEKSSDFEMPARNSDETVEKKNVAKDMSVQRRASARIQAAKQKAEEELHARRGAVVVEEEKEKEEKRVKVAKKWSKKRVRNGEYLGEGEVVVGVASPKKGNNDSGNEEGVGEGEGGVAPSSAKKPKRRPFMQDQNGVGDSENAVANSAENKGAALRVKETIRVYNKHYLHFVQEEEKRCGKAKAESEAAKKSKSSKSKKAGPLEVKKTHQRPDLKALSMMMTNNEILYPEKRIGDLPGIEAGHQFFSRGEMVAVGFHSHWLNGIDYMGKSYGKVNSIYEYPIAVAIVLSGQYEDDVDNADDVVYTGQGGHNLTGDKRQIKDQKLERGNLALKNCIEQDVPVRVIRGHKSSNGKSSNGKSSNGATKIYTYDGLYKVIKYWAEKGISGFTVYKFQLKRIEGQPLMTTNQVYFTRGRVPQSTAEIRGLVCEDITGGQENIPIPATNLVDDPPVAPTGFTYCNSVKVAKNVKFPKAATGCKCKGVCIDSTTCECALRNGSEFPYVAQNGGRLVEAKDVVFECGPNCGCDETCVNRTSQKGIRYRLEVFRTAKKGWAVRSWDFIPAGAPVCEYTGILARTEDMDSVLENNYIFEIDCLQTIKGLGGRERRSQSGTFPSNLLDKYDDHGSDGAPEYCIDAGPTGNIARFINHCCEPNLFVQCVLSTHHNLKFARVVLFAADNIPPLQELTYDYGYELDSVLGPDGKVKQVTCYCGAPGCRKRLF* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2454 722 ProSiteProfiles YDG domain profile. 238 400 IPR003105 -
Amo06g2454 722 ProSiteProfiles Pre-SET domain profile. 478 540 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo06g2454 722 Pfam SAD/SRA domain 237 404 IPR003105 -
Amo06g2454 722 Pfam Pre-SET motif 435 535 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo06g2454 722 SMART PostSET_3 706 722 IPR003616 -
Amo06g2454 722 MobiDBLite consensus disorder prediction 1 56 - -
Amo06g2454 722 Gene3D SET domain 426 722 IPR046341 -
Amo06g2454 722 MobiDBLite consensus disorder prediction 1 31 - -
Amo06g2454 722 SUPERFAMILY SET domain 428 699 IPR046341 -
Amo06g2454 722 MobiDBLite consensus disorder prediction 42 56 - -
Amo06g2454 722 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 81 722 IPR025794 GO:0016571
Amo06g2454 722 SMART preset_2 431 527 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo06g2454 722 ProSiteProfiles Post-SET domain profile. 706 722 IPR003616 -
Amo06g2454 722 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 33 721 - -
Amo06g2454 722 Gene3D - 221 417 IPR036987 -
Amo06g2454 722 MobiDBLite consensus disorder prediction 187 216 - -
Amo06g2454 722 Pfam SET domain 554 692 IPR001214 GO:0005515
Amo06g2454 722 ProSiteProfiles SET domain profile. 543 692 IPR001214 GO:0005515
Amo06g2454 722 MobiDBLite consensus disorder prediction 94 149 - -
Amo06g2454 722 SUPERFAMILY PUA domain-like 220 421 IPR015947 -
Amo06g2454 722 Coils Coil 176 196 - -
Amo06g2454 722 SMART G9a_1 233 404 IPR003105 -
Amo06g2454 722 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 33 721 - -
Amo06g2454 722 SMART set_7 543 698 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2454 Amo-Chr6 86703112 86717480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2454 224 722 EF-hand Containing Proteins AT5G13960 66.335 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo06g2454 SAD_SRA 9.6e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2454 K11420 - gmx:100795584 918.302