Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2447 ATGTCAAGTTCTCTTGCAGCATTATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGCAGGGATTGTTATAATACTCATATGGTTTTGTATTTTTCGCAAGAGAAGTGTTTCGAGAACTTCAGAGACAGGATCCTCTGATCCTTCCCAAGTAGGACGACATGGCACGATTGAGTTGTCGATACGAGATACTAGGCGTTTTGAGATGGAGGAACTATCTGGGGCTACAAAGAGTTTCAGTGACAAGAATTTGATTGGAGAAGGGAAATTCGGGGAGGTTTATAAGGGTTTGCTTCAAGATGGTATGATTGTAGCAATCAAGAAGAGGCGTGGACTCGCGAGTCAGGAGTTTGTTGATGAGGTACGCTATCTCTCATCGATTCACCATCGGAATCTCGTAACTCTTTTAGGCTACTGCCAGGAAAACAACCTGCAGTTTCTTATATACGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCGCCAATCAACAATCGCGAGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCCTTGAGCCCCCGTTTGGTGCACAAGGATTTCAAAACAGCGAATGTACTTGTCGACGAAAACTTCATCGCTAAGGTTGCCGACGCAGGACTTCGTAATTTTTTGGGGAGAGTTGAGATTGCAGGACCATCCTCTCTAGTAGCCGCAGATGAGATATTTCTTGCACCCGAGGTGAGAGAATTCAGACGATTTTCGGAAAAGAGCGATGTATACAGCTTTGGAGTATTTTTGCTGGAATTGTTGAGTGGGAAGGAAGCAACAGAATCAGCATCTCTGGACTCTAGCTACAATCTAGTTGAATGGGTGCAAAATAATGAAGACCATGGCATGATGTCTAACATAATTGATCAAAGATTGGGAAGCACTTTCACTGCTGAAGGAATGGAAGAATTCATAATGCTGATGACAAGGTGTTTAGAATCTTCAAGTGAGAGAAGACCAGGCATGAGTTATGTGGTGATGGAACTTGATAGAATACTTGAGAAAGAAGTGAACTTGACAACAATCATGGGTGAAGCCACCCCAACAGTTACCCTTGGAAGCCAATTATTCAGACCAACAACAACATAA 1143 0.4348 MSSSLAALLGGAAGAVALAGIVIILIWFCIFRKRSVSRTSETGSSDPSQVGRHGTIELSIRDTRRFEMEELSGATKSFSDKNLIGEGKFGEVYKGLLQDGMIVAIKKRRGLASQEFVDEVRYLSSIHHRNLVTLLGYCQENNLQFLIYEYVPNGSVSSHLYGANQQSREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKDFKTANVLVDENFIAKVADAGLRNFLGRVEIAGPSSLVAADEIFLAPEVREFRRFSEKSDVYSFGVFLLELLSGKEATESASLDSSYNLVEWVQNNEDHGMMSNIIDQRLGSTFTAEGMEEFIMLMTRCLESSSERRPGMSYVVMELDRILEKEVNLTTIMGEATPTVTLGSQLFRPTTT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2447 380 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 378 - -
Amo06g2447 380 Gene3D Phosphorylase Kinase; domain 1 41 150 - -
Amo06g2447 380 Gene3D Transferase(Phosphotransferase) domain 1 151 365 - -
Amo06g2447 380 ProSiteProfiles Protein kinase domain profile. 78 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2447 380 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Amo06g2447 380 Pfam Protein tyrosine and serine/threonine kinase 82 347 IPR001245 GO:0004672|GO:0006468
Amo06g2447 380 SUPERFAMILY Protein kinase-like (PK-like) 57 347 IPR011009 -
Amo06g2447 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Amo06g2447 380 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2447 Amo-Chr6 86314391 86319357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2447 4 373 Receptor kinase-like Gene Family AT3G46290 35.696 1.45e-63 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Amo06g2447 PK_Tyr_Ser-Thr 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2447 - - gmx:100305436 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3061 16 132804050 132807395 Amo06g2447 06 86314391 86319357 hybridization