Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2430 ATGGATCATTCAACCTCGGATTGTCAGCTGAATCCTGGCGAGGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGTTTTTGACATGGTGTATTGTGCAACCTCTCTCGGTTGTTGATGACGAGCTTGTTTCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTTCGACCGAGAAGACCAATCCGACAGCCGGTCTAAACTGTCATGCAAGAATTTATATACAAACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAAGGAACTAAGCATGTCCATTCGTCATACAATAGAGAATAACGAGGGGCCGGTATCAGACCAAGCAAAACCTACCAATCATTTGTTGCGGCTGCCGGGGGTCACCGCGAATCTGTATGAAGACCGTCATATATGGGTTCCTATCTATCTGGATCACCACTTTTGGGCAGGGATGAGAAGCACACAAAAGAGCAAGAGCATACATTCATTTTTTAACAAGTTTATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATATGATAATTGCCTTGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCATGCAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTCATGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGTAAGAAGGTAAAGAGGCGACACACACACATTAAGAGCAGCCACGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGTTTTTCGTTCACAAAATATTTGTGAATTTGCATCCGAATCGGAGGAGCTGACTGTAATTCTGCACCGTGCGTACGATAACATCATGGCTGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAACGAGATAAACCTGTTTGATGCTGCATCAGCGGTGCATTCAAATTCCAGCCAATATCAAGGACACGTTATGAATAATCAGTTCAGGGTACTAGCAGCAGGGAATAACTCTTTGGGTGTATAG 1626 0.4367 MDHSTSDCQLNPGEVDYEFESNEVPEFLTWCIVQPLSVVDDELVSKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISSTEKTNPTAGLNCHARIYIQTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHKELSMSIRHTIENNEGPVSDQAKPTNHLLRLPGVTANLYEDRHIWVPIYLDHHFWAGMRSTQKSKSIHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIIPCATKSSIEAQFQDAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFNKFMVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTVILHRAYDNIMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLNEINLFDAASAVHSNSSQYQGHVMNNQFRVLAAGNNSLGV* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2430 541 MobiDBLite consensus disorder prediction 446 483 - -
Amo06g2430 541 SMART 26again6 339 366 IPR006564 GO:0008270
Amo06g2430 541 Pfam SWIM zinc finger 338 361 IPR007527 GO:0008270
Amo06g2430 541 Pfam FAR1 DNA-binding domain 59 144 IPR004330 -
Amo06g2430 541 ProSiteProfiles Zinc finger SWIM-type profile. 328 364 IPR007527 GO:0008270
Amo06g2430 541 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 191 434 IPR031052 GO:0006355
Amo06g2430 541 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 156 IPR031052 GO:0006355
Amo06g2430 541 MobiDBLite consensus disorder prediction 454 468 - -
Amo06g2430 541 PANTHER OS03G0843700 PROTEIN 191 434 - -
Amo06g2430 541 PANTHER OS03G0843700 PROTEIN 40 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2430 Amo-Chr6 85757969 85761021 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g2430 FAR1 1.7e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2430 - - adu:110280503 639.802