Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2427 ATGGTTCTGCAGAACGATATTGATTTGCTTAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTTCAGTCTCCTAATTCTTTCTTCATGGATGTGAAATGCCAAGGTTGCTTCAACATTACCACTGTATTCAGCCACTCTCAGACAGTCGTGGTGTGTGGAAACTGCCAAACGATCTTGTGCCAGCCCACTGGTGGAAGAGCAAGGCTAACCGAGGGCTGCTCGTTTAGGAAGAAGGGAGACTAA 261 0.4751 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGRARLTEGCSFRKKGD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2427 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Amo06g2427 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Amo06g2427 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Amo06g2427 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Amo06g2427 86 Gene3D - 5 85 IPR023407 -
Amo06g2427 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Amo06g2427 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2427 Amo-Chr6 85604566 85605774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2427 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 96.512 5.01e-60 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2427 K02978 - gmx:100499804 176.792