Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2422 ATGAATACTTTTACGTCGTCATCGTCGCAGTCGCCAAGGTCAAAAAAGAAGCAAACTAAGCCGGCCGCGCAGCCGCAAGAGCAGCAGCAACACGAGACAGCATGGGGAGGAAGGTACCTCGGGGTGAGGAGGAGGCCATGGGGGAGGTATGCGGCCGAGATTCGCGACCCTTCCACTAAGGAAAGGCATTGGTTAGGCACGTTTGACACTGCAGAAGAAGCTGCCCTGGCATATGACAGGGCAGCTCGCTCCATGCGTGGCTCACGTGCCCGAACCAACTTCGTCTACCCGGACACTCCTCCAGGCCTATCCGTCACCCCAATCTTGTCACCCGACCAACTCCAACCCCAAACTTATAACCACCACAACCATGTCCATGACTTGTCCTCAATCTTCACCTCTAACTCCACCTCGACTCATCAACACCTTGACTCAGATCCAACTCTAGACCCAGTTACGTTGTTGGTTGGCGCCAACAACAATTGGAGCTATAATAATACCTACGGCTATAGCGGTGGCGATCACCAAAACAGTAGCAACGACGGTTACTACAACAGTAATAGCTATGCCGACCAAGGTTGTCCAAATTTGGGGCACGTTTTTGTTGAAGAGGGTGGAACTAGCAATAGCAATAGCAACAGTAGTGCTTCCACAGTTGAGCTACCTCCATTGCCACCTGATATCACAAGCTCCATTGGTTATAATAACATGGATAATCATGATCATGGTTTTGATTATTATCACAATATGACTACTGGGGATTATGTTCAAAGTCCAATGTTCAATGCAATGCCAACGGTTTCGGAGAATGTGGCTGGAGCTGATGGTTTTGAATTGGGGGGTTCCTCTTATTTCTTCTGA 861 0.4925 MNTFTSSSSQSPRSKKKQTKPAAQPQEQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGLSVTPILSPDQLQPQTYNHHNHVHDLSSIFTSNSTSTHQHLDSDPTLDPVTLLVGANNNWSYNNTYGYSGGDHQNSSNDGYYNSNSYADQGCPNLGHVFVEEGGTSNSNSNSSASTVELPPLPPDITSSIGYNNMDNHDHGFDYYHNMTTGDYVQSPMFNAMPTVSENVAGADGFELGGSSYFF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2422 286 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Amo06g2422 286 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Amo06g2422 286 MobiDBLite consensus disorder prediction 1 37 - -
Amo06g2422 286 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Amo06g2422 286 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 4 286 - -
Amo06g2422 286 MobiDBLite consensus disorder prediction 1 33 - -
Amo06g2422 286 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Amo06g2422 286 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Amo06g2422 286 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 286 - -
Amo06g2422 286 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Amo06g2422 286 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Amo06g2422 286 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2422 Amo-Chr6 85490020 85491127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2422 26 282 AP2-EREBP Transcription Factor Family AT5G13910 42.692 1.27e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo06g2422 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2422 K09286 - gmx:100809600 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3049 16 132379085 132379945 Amo06g2422 06 85490020 85491127 hybridization
Amo06g2422 06 85490020 85491127 Amo20g3672 20 147240375 147246162 PCT
Amo20g3672 20 147240375 147246162 Amo06g2422 06 85490020 85491127 PCT