Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2411 ATGATCTCCTCACTCTCGCTCTTCAGCTGCCACTTCCCATTTCCCAATTCGTCCAACTTCAAACTCATTCACAACTCAAACCTTCTAACCATTTTCATTTCCTTTTTCTTTTTTGCCTTCATCATCACCCTCCTATTCTCTTTTTCTTCTTCAGCAATGAGTTTCCAAGATATCCAAGGCGGCCCTAACGCAGCCGTGCGAAGAAGCCAGTCTCCGTCGCAGGTCATCGCCGCCGGAATCTTCCAGATCAACACTTCCGTCGCCACTTTCCGCCGCCTCGTTGATTCTCTTGGAACCGTTAAAGACACTCCCGACCACCGCCAGAAGCTGCACAACACGAGACAGAGGATATTGAAGCTGGTGAAGGATATTTCTGCTAAGCTCAAGTCGTTGAGTGAATCTGATCGCCATGCTTCTGGTGCCAATGCTAACAAGAAAATTGAAGATGCTAAGCTAGCAAGAGATTTCCAAACCACATTGCAGGAATTCCAGAAGGTGCAGCAGCTTGCATCCGAGCGCGAATCGACTTACACCCCTACTACTGCCCCTCCGCCCTCTTTTCCAACAAGCTCTGGCTCTGGTGAAGAATCCGGTGAGAGAGACCAGGAAAGCCAACCTTTTATGAGGGAGCAAAGAAGGCAAGAGGTACTTCTCTTGGATAATGAAATCTCCTTCAATGAGGCCATGATTGAAGAAAGAGAACAGGGTATTAGAGAGGTAGAAGAACAAATCGGACAAGCAAATGACATATTCAAGGACCTGGCTGTCCTTGTTCATGACCAAGGGGTTGTTATTGATGACATTCAATCGAACATCGATAATTCCTCTGCTGCAACAACCCAAGCGAGAGTTCAGTTAGCAAAAGCTTCCAAAAGTGTGAAATCTAGAACCTCATGGTGTTGGTGGGCGCTTGTAATTTTTGTGGTGATTGTGGTGATCATACTTGTTGTACTGATTATTTAG 963 0.4621 MISSLSLFSCHFPFPNSSNFKLIHNSNLLTIFISFFFFAFIITLLFSFSSSAMSFQDIQGGPNAAVRRSQSPSQVIAAGIFQINTSVATFRRLVDSLGTVKDTPDHRQKLHNTRQRILKLVKDISAKLKSLSESDRHASGANANKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPTTAPPPSFPTSSGSGEESGERDQESQPFMREQRRQEVLLLDNEISFNEAMIEEREQGIREVEEQIGQANDIFKDLAVLVHDQGVVIDDIQSNIDNSSAATTQARVQLAKASKSVKSRTSWCWWALVIFVVIVVIILVVLII* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2411 320 Gene3D - 62 181 - -
Amo06g2411 320 SMART SynN_4 60 175 IPR006011 GO:0016020
Amo06g2411 320 MobiDBLite consensus disorder prediction 165 209 - -
Amo06g2411 320 SMART tSNARE_6 222 289 IPR000727 -
Amo06g2411 320 PANTHER SYNTAXIN 67 319 IPR045242 -
Amo06g2411 320 MobiDBLite consensus disorder prediction 165 180 - -
Amo06g2411 320 PANTHER SYNTAXIN-22-LIKE 67 319 - -
Amo06g2411 320 Gene3D - 221 320 - -
Amo06g2411 320 Pfam Syntaxin-like protein 76 177 IPR006011 GO:0016020
Amo06g2411 320 SUPERFAMILY t-snare proteins 72 282 IPR010989 GO:0016020|GO:0016192
Amo06g2411 320 Pfam SNARE domain 264 315 IPR000727 -
Amo06g2411 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Amo06g2411 320 CDD SNARE_Qa 230 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2411 Amo-Chr6 85057491 85060212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2411 53 307 SNARE and Associated Proteins AT5G46860 57.915 1.69e-97 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2411 - K08488 aip:107604899 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3043 16 132111444 132113481 Amo06g2411 06 85057491 85060212 hybridization