Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2356 ATGTGTGAGGACATCAAGTTCGCCGTCGACCGGGGCAATTCTCACCAAGACAAGGCACAACAGGTTGGAAAAGGAGGAACATATTACATCATTCAGAATCTCAAAATGAAGTGTTTTTTTACAAGAGAAGTTGACAAAAGAAAGGTAGAAAAGCTAGAAAAGCTTCAAGCAAAACATATGAAGCTTCAAAGAAAGGGACAAACTCTATTGTTTTCCCAAATTTTCAGCCACAAAACTATTGGGGATAACAGAGCCAAGAGCAGCATAGACCAAGAGGTTCAAAATTTATCTGAAAGGGTCAGCAAGAGGATTCATACATTAAAAGAACGCATACCCGATTGCAATAAGATTGATAAAGCTTCAACTCTTGATGATGCAATTGACTATCATAATGTCAATGGGGAGAGGACTTTGCATGCCATTGGGGCATTGATGATGTTCAACTTTCATCAATCCTACTCCACCACTTGCACCGTTGTCAATCACCAATTCTTCCAGTCTAGATGTCTCACATGTTCAAGCAATCAATGA 531 0.3955 MCEDIKFAVDRGNSHQDKAQQVGKGGTYYIIQNLKMKCFFTREVDKRKVEKLEKLQAKHMKLQRKGQTLLFSQIFSHKTIGDNRAKSSIDQEVQNLSERVSKRIHTLKERIPDCNKIDKASTLDDAIDYHNVNGERTLHAIGALMMFNFHQSYSTTCTVVNHQFFQSRCLTCSSNQ* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2356 176 Coils Coil 45 65 - -
Amo06g2356 176 Gene3D - 85 132 IPR036638 GO:0046983
Amo06g2356 176 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 133 IPR011598 GO:0046983
Amo06g2356 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 129 IPR036638 GO:0046983
Amo06g2356 176 Pfam Glycosyl transferase family 90 2 38 IPR006598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2356 Amo-Chr6 83661064 83663031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2356 76 129 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 45.763 4.11e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2356 K12126 - adu:107460111 70.0922