Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2311 ATGATGTTGCTACCGTGCGACTACTGCGATTCCAAAACGGCAGTTCTCTTTTGCCGCGCCGACTCTGCCAAGCTCTGCATCTCATGTGATCAGCACGTGCACTCCGCCAACGCCCTCTCACTCAAGCACGTGCGCTCTCAGATTTGCGATAACTGCCGCAACGAACCTGCAGCCGTGCGATGCGCCACCGACAATCTCGTCCTCTGCAACGACTGCGACTCCGACGCACACAACAGTTCCTCCGTCGCCTCCTCCCTCCACGCCCGCCACCGCCTCCATGGCTTCTCCGGCTGTCCCCCCGCCCTCGAAATCGCCGCCGCCTTAGGGATCGAGCTCAAGTTCAACTCYAACTGCAACGGCGGCTCYGGTAACACSTCTGGATTCGACGAGATTAAAGGTCCGGTKGTGCCGATCGTGAAGGACAAGGTGTATGAGCAGGTGCTGGAGATGGCGAGAAGGAACGGCACGGCGGCGGATCGAAACGAAGAAGTTGAAGCTGGATTGTGCCCTGATACGCCGCCGTGCGTTCAGGGTGCTGAGGAGAAGGGTGAATTGAATACTTGTAACAGTTTTAGTAACAATAAGAGGAGTGCGAATCGTAACAACAACAATAACAAGAACAACGATGATGAGTTGTTGATGGAGCAAACGCCGTTCACTTCTTTGTTGATGCTGCCTTCTGATGGCGGAAGCGTGAAGAGAAATGATTGCGGCAGTGAAGGGGATCTTCTCTGGAATAATTGCAATCCTGCGTATCAGCCTCCTCAGGTATGGGATTTTCAGTTACAAAAATCAAGAGATTGCAGTGAAGCAGGAATGATGTCATTTGATAATCTAGATGAAGCTTCATTAGTGATTCCAAAAACATTGCAAGATGTGCACAATATCAACTCCTCAACAATTGATGATATTCTATCAAGAAATAATCAATCGGATCAGTCGTCTTCAAACCATGTGATGAAAAACGAAGAAAGCAACAAGAAACCTAGAGGTGGATTATCATCAGAGTCCAAATTGGTTGAACCCATAACATACAGTAGCACCAACAATGCAGCATACATGGAGCATCTTGTGAGTGGGAGTGAAAATGTTAGCACCATAAAGGACAAGGTTAACTTTGAAGAGCTGACTAAAAATAGAGGGGATGCCATGTTACGCTACAAGGAAAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGCTATGAATCGAGAAAAGCKAGGGCTGATACGAGAAAAAGGGTGAAAGGACGATTTGTGAAGGCAAGTGATGCAAGTGATGTTCAAAACGAAGAATGA 1299 0.4796 MMLLPCDYCDSKTAVLFCRADSAKLCISCDQHVHSANALSLKHVRSQICDNCRNEPAAVRCATDNLVLCNDCDSDAHNSSSVASSLHARHRLHGFSGCPPALEIAAALGIELKFNSNCNGGSGNTSGFDEIKGPVVPIVKDKVYEQVLEMARRNGTAADRNEEVEAGLCPDTPPCVQGAEEKGELNTCNSFSNNKRSANRNNNNNKNNDDELLMEQTPFTSLLMLPSDGGSVKRNDCGSEGDLLWNNCNPAYQPPQVWDFQLQKSRDCSEAGMMSFDNLDEASLVIPKTLQDVHNINSSTIDDILSRNNQSDQSSSNHVMKNEESNKKPRGGLSSESKLVEPITYSSTNNAAYMEHLVSGSENVSTIKDKVNFEELTKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDASDVQNEE* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2311 432 MobiDBLite consensus disorder prediction 301 339 - -
Amo06g2311 432 ProSiteProfiles CCT domain profile. 380 422 IPR010402 GO:0005515
Amo06g2311 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-LIKE 4 429 - -
Amo06g2311 432 ProSiteProfiles Zinc finger B-box type profile. 44 95 IPR000315 GO:0008270
Amo06g2311 432 MobiDBLite consensus disorder prediction 187 211 - -
Amo06g2311 432 SMART bboxneu5 49 85 IPR000315 GO:0008270
Amo06g2311 432 SMART bboxneu5 1 48 IPR000315 GO:0008270
Amo06g2311 432 Pfam B-box zinc finger 46 89 IPR000315 GO:0008270
Amo06g2311 432 CDD Bbox1_BBX-like 5 48 - -
Amo06g2311 432 MobiDBLite consensus disorder prediction 301 320 - -
Amo06g2311 432 Pfam CCT motif 380 422 IPR010402 GO:0005515
Amo06g2311 432 MobiDBLite consensus disorder prediction 405 432 - -
Amo06g2311 432 ProSiteProfiles Zinc finger B-box type profile. 6 48 IPR000315 GO:0008270
Amo06g2311 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2311 Amo-Chr6 82911664 82916090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2311 3 424 C2C2-CO-like Transcription Factor Family AT2G33500 37.978 6.97e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo06g2311 zf-B_box 9.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2311 - - ahf:112697135 803.897