Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2282 ATGGTTCGTGCTATAAAGGCTGCAATTGGTGATGGGGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCCATGTTGGGGATAGCTTCAAGCTCCATAACAAGATTTCTTGACATTCAGCACCTCCATTACAATGGCTTCCCTTACCCTTCATTCCTTGTCACAACTTTCCTTGTTTTCGTACTTGTCTTTGTGTTCACCATCATTGGCAATGCCTTGGGTGGTGCCAGCTTCAATCCCACTGGCACTGCTGCGTTCTATGCTATTGGTCTTGGCTCTGACTCACTCTTCTCCATGGCTCTGCGCTTCCCTGCCCAGGCTCTTGGTGCTGCTGGTGGAGCTTTGGCAATTATGGAGATAATTCCTTCGAAATACAAACACATGATGGGAGGCCCTTCATTGAAAGTGGATCTGCACACCGGTGCTGTTGTTGAGGGAGTGTTGACTTTTGTGATCACTTTTGCTGTGCTCTACATAATCCTCAAGGGCCCTCGTAGTGACTTGCTCAAGACTTGGTTGCTCGCCATGTCGACCGTCGCACTAGTCATGGTTGGATCGGCTTACACGGGTCCATCCATGAATCCTGCCAATGCGTTTGGTTGGGCATACCTAAATAACTGGCACAACACATGGGATCAATTCTATGTATACTGGATCTGCCCCTTCGCCGGAGCAATATTTGCCGCATGGTTTTTCCGTGCCATCTTCCCCCCACCAGAAGCTACACAGGAGAAGAAACAGAAGAAAGCATGA 750 0.4867 MVRAIKAAIGDGVLTFMWVFCSSMLGIASSSITRFLDIQHLHYNGFPYPSFLVTTFLVFVLVFVFTIIGNALGGASFNPTGTAAFYAIGLGSDSLFSMALRFPAQALGAAGGALAIMEIIPSKYKHMMGGPSLKVDLHTGAVVEGVLTFVITFAVLYIILKGPRSDLLKTWLLAMSTVALVMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFAGAIFAAWFFRAIFPPPEATQEKKQKKA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2282 249 Pfam Major intrinsic protein 4 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g2282 249 SUPERFAMILY Aquaporin-like 4 244 IPR023271 -
Amo06g2282 249 PANTHER AQUAPORIN SIP1-1 3 246 IPR044222 GO:0015250
Amo06g2282 249 Gene3D Glycerol uptake facilitator protein. 2 248 IPR023271 -
Amo06g2282 249 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g2282 249 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g2282 249 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g2282 249 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g2282 249 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g2282 249 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g2282 249 PANTHER AQUAPORIN SIP1-1 3 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2282 Amo-Chr6 80941930 80945993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2282 4 249 Major Intrinsic Protein MIP AT5G18290 55.466 1.83e-82 245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2993 16 130362748 130366021 Amo06g2282 06 80941930 80945993 hybridization
Amo06g2282 06 80941930 80945993 Amo20g3617 20 146725219 146728783 PCT
Amo20g3617 20 146725219 146728783 Amo06g2282 06 80941930 80945993 PCT