Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2280 ATGGATCTCAAAAGCCTCTTCACATTTTTATTCTTATTGATGCCATCATTCTGTTCCTCTCAATCCCTGAGGATTAACAACATTTTCTTTACTCATCGTAAGATACTAGCAAAACAGAAATCCAATGATAATAATAATAATAATGTTACTTCTTATGCTGTCATATTTGATGCTGGCAGCTCTGGATCTCGTGTTCATGTCTTCCATTTTGACCAGAATCTCAACCTCCTTCATATTGGCAATGAAATTGAGTTTTATAAGAAGATCAAACCCGGTTTGAGTGCATATGCAGATAATCCAGAAGAAGCAGCAGAATCTCTGATTCCACTCTTAGACGAAGCACAAAATATTATTCCACCTCAATTCCAACCCAAAACACCCCTTAGGCTTGGGATTACAATAAAAGTAGGCAAGAATTTGCTACACGTTAATAGGTATGATTTGAATCTAAGTTTTGATGTGACACTTAACTATCTATTGGGAAACTTGGGGAACGAGTATTCAAGAACGGTAGGAGTGGTTGATCTTGGAGGTGCATCAATTCAAATGGCATATGCGGTTTCAAAGGACACAGCTCAAAATGAACTGAATATAACCTCTATGTTCACAGGCACCTACTTGCACTATGGTAGTGATGCTGCTCGTGCTGAGATTCTGAATATCACTCATAATTCTGCTAACCCTTGCGTTTTAGCGGGCTTTAATGGGACATACGCATACTTAGGAAATGAGTATAGGGCATATGCACCAAGTTCAGGGTCCAGCTTTGAAAAATGTAGGCATATAGTTCGTGAGGCCCTCAAATTAGAAACAACATGTCCATATAATAAAGATTGCACTTTTGGTGGAATATGGAATGGTGGAGGTGGCAGTGGACAAAAAAAATCTCTATGTTGCTACACGGGTATAGTTGATCTGAATAAATCCAATTCCGAAGTTATTCCGTTGGATTACAAAGTTGCGGCTAAGAAAGCATGTAATACAAAATATGAAGATGCTGCATCTATTTATCCTATTACGACCAATGCCAAACTTCCCTATGTCTGCATGGATCTCACCTACCAATATACATTGCTCGTTGAGGGATTTGGAATACATCCATGGCAAGAGATTACAGTTACAAAGCAAATTGAATATGAAGATGCTTCAGTAGATGCGACCTGGCCACTAGGCAGTGCCATAGAAGCCATATCTTCATTACCTAAATTTGAGCGATTAATGTATTTCATTTAA 1233 0.3836 MDLKSLFTFLFLLMPSFCSSQSLRINNIFFTHRKILAKQKSNDNNNNNVTSYAVIFDAGSSGSRVHVFHFDQNLNLLHIGNEIEFYKKIKPGLSAYADNPEEAAESLIPLLDEAQNIIPPQFQPKTPLRLGITIKVGKNLLHVNRYDLNLSFDVTLNYLLGNLGNEYSRTVGVVDLGGASIQMAYAVSKDTAQNELNITSMFTGTYLHYGSDAARAEILNITHNSANPCVLAGFNGTYAYLGNEYRAYAPSSGSSFEKCRHIVREALKLETTCPYNKDCTFGGIWNGGGGSGQKKSLCCYTGIVDLNKSNSEVIPLDYKVAAKKACNTKYEDAASIYPITTNAKLPYVCMDLTYQYTLLVEGFGIHPWQEITVTKQIEYEDASVDATWPLGSAIEAISSLPKFERLMYFI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2280 410 Gene3D Exopolyphosphatase. Domain 2 154 378 - -
Amo06g2280 410 Gene3D - 49 147 - -
Amo06g2280 410 Pfam GDA1/CD39 (nucleoside phosphatase) family 154 402 IPR000407 GO:0016787
Amo06g2280 410 Pfam GDA1/CD39 (nucleoside phosphatase) family 47 133 IPR000407 GO:0016787
Amo06g2280 410 CDD NBD_sugar-kinase_HSP70_actin 54 185 - -
Amo06g2280 410 PANTHER NOD FACTOR-BINDING LECTIN-NUCLEOTIDE PHOSPHOHYDROLASE 154 410 - -
Amo06g2280 410 PANTHER NOD FACTOR-BINDING LECTIN-NUCLEOTIDE PHOSPHOHYDROLASE 5 141 - -
Amo06g2280 410 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 154 410 IPR000407 GO:0016787
Amo06g2280 410 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 5 141 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2280 Amo-Chr6 80744961 80754897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2280 38 399 Calmodulin-binding Proteins AT3G04080 44.096 4.87e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2280 K14641 - gmx:100781628 432.95