Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2273 ATGCCCCCTTCCCCTCTTGGCCTAATCTCTTTCTCCACATGGCGACAAATTCCGTCAACCATAAAATCCCCCTCACTTCTCACCTCCCCAAAAATTTCAATCCTCTCTTCTTCCCTTTTCCTAGACTTTAGTTTGCTACACCAAACTTCTCTCTCCCTTCTGTTATTCTTATTATTCCTCACCAAGCCTATAACAAATATTTTGTTACACCAAATTATTAGGCTCTCAAAAATGGGATCACCGGAATCAAATTTGCCACCAGGTTTTAGGTTCCATCCAACCGATGAAGAACTCATTCTTCACTACCTTAGGAAGAAGGTAGCATCCATACCCTTACCTGTTTCCATCATCGCTGAGGTTGATATCTACAAATTGGATCCATGGGAATTACCAGCTAAGGCTGCGTTTGGTGAGAAAGAATGGTACTTCTTCAGTCCAAGAGACCGGAAGTACCCAAACGGTGCGAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCTACGGGTACCGACAAGACCATAGTGGTGTCGCCGGCGGCCACAGTTACACGTAGAGTAGGCCAAGAGAGCAGCGTTGGTGTCAAGAAGGCTCTTGTTTTCTACAAAGGAAGGCCTCCAAAGGGTGTTAAAACCAATTGGATCATGCACGAATATCGTCTTGTAGACAACAATAGACCCATTAAGCTCAAAGATACCTCCATGAGATTGGATGACTGGGTTCTGTGCCGGATTTATAAGAAGTCGAAATTCTCAGTATCTTCACCGGAGGAATCACCGTCGAGTGAAGTTCAGGCTGCAGAAGAAAATGGTTTATTCAAGAACACCATTTTAAGGAGTCCAATTCCAACACCGTCGCCATCACCACCGCCGCCGCTGCCGCAGTCACTGCTCTCTCAAAAATCTGTGTCCTTCTCAAACCTCTTAGATGCCATGGACTACTCCATGCTCAGCACCATCTTATCTGAGAACAATAACAACAGCACCCTTGATCAGGAACAATACTCCCAGATCAACACCAACCAATTGAACCATTCATCGAACATGGAGAACACTAGTAACAGCAACATGATGCTGATGAGGTCAAAGCGCCAGATAGACGAGGAAACAACAACGGTGTTGCACCCATCAAAGAAGTTCCATCACCAACTTATGGGCTCTTCTTCTTGCAGCTTCCCTAATAACATTAACAACACAAACACTGCACAATACGAGAACCCGCAATGGAACTACCTTGTCAAGCAATCCTTCTTGAACCAGCACTTACTTCTCGCTCCTCATCTTCGATTTCAAGGATAA 1299 0.4534 MPPSPLGLISFSTWRQIPSTIKSPSLLTSPKISILSSSLFLDFSLLHQTSLSLLLFLLFLTKPITNILLHQIIRLSKMGSPESNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKLDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVVSPAATVTRRVGQESSVGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNRPIKLKDTSMRLDDWVLCRIYKKSKFSVSSPEESPSSEVQAAEENGLFKNTILRSPIPTPSPSPPPPLPQSLLSQKSVSFSNLLDAMDYSMLSTILSENNNNSTLDQEQYSQINTNQLNHSSNMENTSNSNMMLMRSKRQIDEETTTVLHPSKKFHHQLMGSSSCSFPNNINNTNTAQYENPQWNYLVKQSFLNQHLLLAPHLRFQG* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2273 432 MobiDBLite consensus disorder prediction 282 296 - -
Amo06g2273 432 ProSiteProfiles NAC domain profile. 85 248 IPR003441 GO:0003677|GO:0006355
Amo06g2273 432 PANTHER OS01G0104200 PROTEIN 79 372 - -
Amo06g2273 432 PANTHER NAC TRANSCRIPTION FACTOR 56 79 372 - -
Amo06g2273 432 Pfam No apical meristem (NAM) protein 86 221 IPR003441 GO:0003677|GO:0006355
Amo06g2273 432 Gene3D NAC domain 94 252 IPR036093 GO:0003677|GO:0006355
Amo06g2273 432 MobiDBLite consensus disorder prediction 277 298 - -
Amo06g2273 432 SUPERFAMILY NAC domain 75 248 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2273 Amo-Chr6 80653570 80655816 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2273 81 432 NAC Transcription Factor Family AT3G04070 48.229 5.05e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo06g2273 NAM 1.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2273 - - ahf:112754912 743.421