Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo06g2263 | ATGAACATGGAGGGTGAGTTCCAGAAAGAGCAACAAGTGCTGCTTGTTGCTGACCCTGCTTCTTGCTCAAAGCTTTCTACTACTTCAACCACCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGGGTTGGAATGGTTATCAGTGTTTGTTGAAGAATGCTTTTCAAACCCACCAAGCTATATATTGGGACCTTCAAAGAGTGTTGAGGCCACAACAACCACCACCATAACTACCTGCTCGTCCAACAAGAACCCTTCTTCAACCGCACTACTGAAGCAAAACAACAACAATGATTCCTCACTACAAAACTTTTCAGTCCCTAGTAAGGCTAGAAGCAAAAGAAAGAGGCTCTCAGCAGTTACCAACAGACGAAGAACCAAAACTCCTTTCAGCATTTGGTCACACCAAAATGATGAGCCCTTGATTTCAGACCCTCCTCTGTTAAAACAAACTTATTGGTTAGCGGATAGTGAACTCTTTGTTTTGCCAAAGCAGCAGAAGAAGGATAGTGAGAAAGATGTAATAGCCAAAGACGGCGACGACAACGACAACGACGGCGGTGGCGAAAAGGGGGTGGTGGTGATGAAGAGGGGAAGTCTTGTGAGTCTTGAAGAGTGCTCTGAGGCAGAGGAAGATGGTGATGGTGGGAATAACAATAATAATAATAATAACAATAATGGTGAGAATCCAATGCCAAGAAGGTGCACACATTGTTTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACGCTATGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTACCTGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTAAGTTACTTGCACTCCAATTCTCACAAGAAAGTTATGGAGATGAGGATGGCTGGCTCTGTTCTCCATTCTTAG | 930 | 0.4505 | MNMEGEFQKEQQVLLVADPASCSKLSTTSTTLDDLFSAQNTEVDVGLEWLSVFVEECFSNPPSYILGPSKSVEATTTTTITTCSSNKNPSSTALLKQNNNNDSSLQNFSVPSKARSKRKRLSAVTNRRRTKTPFSIWSHQNDEPLISDPPLLKQTYWLADSELFVLPKQQKKDSEKDVIAKDGDDNDNDGGGEKGVVVMKRGSLVSLEECSEAEEDGDGGNNNNNNNNNNGENPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAGSVLHS* | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo06g2263 | 309 | MobiDBLite | consensus disorder prediction | 217 | 233 | - | - | |
| Amo06g2263 | 309 | Pfam | GATA zinc finger | 239 | 273 | IPR000679 | GO:0006355|GO:0043565 | |
| Amo06g2263 | 309 | CDD | ZnF_GATA | 238 | 285 | IPR000679 | GO:0006355|GO:0043565 | |
| Amo06g2263 | 309 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 21 | 303 | - | - | |
| Amo06g2263 | 309 | MobiDBLite | consensus disorder prediction | 169 | 191 | - | - | |
| Amo06g2263 | 309 | ProSitePatterns | GATA-type zinc finger domain. | 239 | 264 | IPR000679 | GO:0006355|GO:0043565 | |
| Amo06g2263 | 309 | ProSiteProfiles | GATA-type zinc finger domain profile. | 237 | 269 | IPR000679 | GO:0006355|GO:0043565 | |
| Amo06g2263 | 309 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 234 | 297 | - | - | |
| Amo06g2263 | 309 | Gene3D | - | 228 | 300 | IPR013088 | GO:0006355|GO:0008270 | |
| Amo06g2263 | 309 | PANTHER | GATA TRANSCRIPTION FACTOR | 21 | 303 | - | - | |
| Amo06g2263 | 309 | MobiDBLite | consensus disorder prediction | 83 | 112 | - | - | |
| Amo06g2263 | 309 | SMART | GATA_3 | 233 | 287 | IPR000679 | GO:0006355|GO:0043565 | |
| Amo06g2263 | 309 | MobiDBLite | consensus disorder prediction | 209 | 233 | - | - | |
| Amo06g2263 | 309 | MobiDBLite | consensus disorder prediction | 83 | 127 | - | - | |
| Amo06g2263 | 309 | MobiDBLite | consensus disorder prediction | 169 | 195 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo06g2263 | Amo-Chr6 | 80371591 | 80373276 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo06g2263 | 16 | 301 | C2C2-Gata Transcription Factor Family | AT4G32890 | 35.395 | 1.71e-39 | 139 |
Transcription factors information