Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2255 ATGACTATTTGGAGTATGCTAGCACTTTGCCCGCTGAGCTTCAGAGGCTTCTCAATACTGTGCGAGAACTTGATGAACGATCCCAATACTAGGCAGCAGACAAAGGTGTGTATGGGGATCTCATCACATGGCTCTAAGAAGGGTAACCATGTCAGTGGCCATCATTATAATAACAATCATCATGCAAATGAGGAAGACGAGGCTGCGATTGAGAAATTGCAAAAGGAAATCGAGGCCAATCAGGATAATGCATTGAACCTATGTACTGAGAAAGTTTTGTTGGCACGGCAAGCATATGACTTGATAGATAGTCATGTCAAACGTCTTGATGAGGATTTAAACAACTTTGCTGAAGATCTGAAGCAAGAGGGGAAAATACCACCGGATGAACCAGCAATTCTTCCCCCATTGCCTATAGTCCCTAAACCTGAAAAACGCAAGCCCTTATATGTAACACCACAGTCAAAGAGGCTTGATTACAGGGATAGAGACTGGGATCGGGAGCATGATAGAGACTTTGAGCTAATGCCTCCACCAGGTAGCCATAAGAAGGAGTATGTAACTCCTATGGAGATGGATACACCTATTGATCCAAATGAGCCAACATACTGTGTTTGTCATCAGGTGTCTTTTGGTGACATGATTGCTTGTGACAAYGAAAATTGCCAAGGAGGAGAATGGTTCCACTATTCATGTGTCGGCTTAACTCAAGAGACAAGGTTCAAGGGTAAATGGTATTGTCCAACCTGCAGATTACTACCACAATGCCAATGA 774 0.4328 MTIWSMLALCPLSFRGFSILCENLMNDPNTRQQTKVCMGISSHGSKKGNHVSGHHYNNNHHANEEDEAAIEKLQKEIEANQDNALNLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKPEKRKPLYVTPQSKRLDYRDRDWDREHDRDFELMPPPGSHKKEYVTPMEMDTPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2255 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 252 IPR013083 -
Amo06g2255 257 PANTHER INHIBITOR OF GROWTH PROTEIN 29 253 IPR028651 -
Amo06g2255 257 PANTHER PHD FINGER PROTEIN ING2 29 253 - -
Amo06g2255 257 Coils Coil 63 90 - -
Amo06g2255 257 SMART PHD_3 203 251 IPR001965 -
Amo06g2255 257 CDD PHD_ING 203 250 - -
Amo06g2255 257 SMART ING_2 20 116 IPR024610 -
Amo06g2255 257 Pfam Inhibitor of growth proteins N-terminal histone-binding 59 116 IPR024610 -
Amo06g2255 257 Gene3D - 25 114 - -
Amo06g2255 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Amo06g2255 257 Pfam PHD-finger 203 251 IPR019787 -
Amo06g2255 257 SUPERFAMILY FYVE/PHD zinc finger 178 252 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2255 Amo-Chr6 80148497 80156879 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo06g2255 ING 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2255 K11346 - gmx:100787916 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2956 16 129110233 129115048 Amo06g2255 06 80148497 80156879 hybridization