Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2190 ATGGCGCCGAAGCAGAGAGCAGCAAGGAAGGTCGGCAGGAACCCTGAACTGGTGCGGGGGATCGGGAAGTACTCTCGGTCTCAGATGTACCACAAGAGGGGTTTGTGGGCCATAAAGGCTAAGAATGGTGGCAAGGCTAGCATTACTCCTGGGACAGTGCTGATTCTTCTTGCTGGAAGATTCAAGGGGAAGAGAGTTGTGTTCCTCAAGCAGCTTCCTTCTGGGCTGCTTCTTGTGTCTGGACCCTTCAAGATTAATGGAGTTCCGTTGAGACGTGTGAATCAGTCGTATGTTATTGCCACATCAACCAAAGTAGATGTGTCTGCTTGTAACGTGGAGAAATTCGATGACAAATACTTTTCAAAGGAAGTCCAGAAAAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAGTCCGAGAAAGAGGAGAAGAAGACCCTCCCTCAAGACAAGAAGGATGACCAGAAGACTGTTGATTCTGCTTTGATAAAAGCCATAGAGAGTGTTCCAGACTTGAAGTTTTACCTTGGTGCTAGGTTTTCTTTGAAGCAAGGCCAGAAGCCTCATGAATTAGTCTTCTAG 579 0.4698 MAPKQRAARKVGRNPELVRGIGKYSRSQMYHKRGLWAIKAKNGGKASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIATSTKVDVSACNVEKFDDKYFSKEVQKKKKKGEGEFFESEKEEKKTLPQDKKDDQKTVDSALIKAIESVPDLKFYLGARFSLKQGQKPHELVF* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2190 192 PANTHER 60S RIBOSOMAL PROTEIN L6 45 192 - -
Amo06g2190 192 SUPERFAMILY Translation proteins SH3-like domain 47 136 IPR008991 -
Amo06g2190 192 MobiDBLite consensus disorder prediction 131 155 - -
Amo06g2190 192 PANTHER 60S RIBOSOMAL PROTEIN L6 45 192 IPR000915 GO:0003735|GO:0005840|GO:0006412
Amo06g2190 192 Pfam Ribosomal protein L6e 85 192 IPR000915 GO:0003735|GO:0005840|GO:0006412
Amo06g2190 192 CDD KOW_RPL6 46 192 IPR041997 -
Amo06g2190 192 ProSitePatterns Ribosomal protein L6e signature. 86 104 IPR000915 GO:0003735|GO:0005840|GO:0006412
Amo06g2190 192 Pfam Ribosomal protein L6, N-terminal domain 5 41 IPR005568 GO:0003735|GO:0005840|GO:0006412
Amo06g2190 192 Gene3D - 46 130 IPR014722 -
Amo06g2190 192 PANTHER 60S RIBOSOMAL PROTEIN L6 1 44 IPR000915 GO:0003735|GO:0005840|GO:0006412
Amo06g2190 192 PANTHER 60S RIBOSOMAL PROTEIN L6 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2190 Amo-Chr6 78511527 78512911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2190 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 67.094 2.59e-90 262