Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2179 ATGGAAGCCAACGCAGCCATTAAGGAAAGCGAGCAACATGAAGACGAAATCTCTGATTCCTTTGTTTGCTGTGTTTGCCTAGAACTGTTGCACAAGCCCATTGTACTCGCGTGTGGTCATCTATCTTGTTTCTGGTGCGTCCATAAATCAATGGATGTTATACGCGAGTCTCATTGTCCGATTTGTAGACAATCATACTATCACTTTCCAACAATCTGTCAAATGCTTCACTTTTTGCTTCTTAAGCTGTATCCTGATGCTTACAAGAGGAGGTTACATCAGGTGCTTGAGGAAGAAAAGGAATTGGGATATTTCTCCCCTCAATTTGATGATGATATATGTGGATCACAAGCTAAAATTGATAATCCTGAGAGTTCACATTCTACCGCTACTAAAGATCCCTCATCCAACTCAAGCAACTTGGAAACTTGTGAATGTAAGGAACAATCAGGCTCTTCCAATCATGAAGGAAAAGAAGGTGCCATCATTTATGAAGACACATCCAATAGAATGCCTGAGGTTATGGGAACAACTTCCATTGCAGGAAAAAAAGTACCCGAGAATGACAAGCACAATCAGCAACAGAAAATAACAATTGCAGATGTGACTTGTACAAAGTGCAAGCAATTGCTCTTTCATCCTATTGTTCTTAATTGTGGTCATGTATTCTGTGAAGTTTGCATGATGAACATAGACGATCAGGTGCTTAAATGCCAAATTTGTCAAAGTTTGCATCCAAGAGGATTTCCAAAAGTTTGCTTGGCCCTTGATCACTTTTTGAAGGAACAATTTCCAGAAGAATATGCAAAGCGAAGAGATGCTTCTCAATTTAGCCAAGTCAAAGTCAAACCTAAGATCTCATCTTGTTCATCAGGAAATGGTGAAGCAGAATTGTCTGGTCTTCCATCAAGAATTCACATAGGAGTTGGATGTGATTTTTGTGGGATGTATCCGATAATTGGGGAGAGATACAAATGCATTGACTGTAAGGAAGAAATTGGTTTTGATCTTTGCGGTGATTGCCATAAAACGCATTCAAAGCTACCAGGCCGATTCAATCAGCAGCACACTCCTGAGCACAGGTTTGAGTCTGTACAAGGTTTTAGATCAGTTGGGGGGTGGTATGCACACGAGTCTCTGGAAATTTCAGGACATGTATCCGAAGATCCCAGTTCGCCCAACGAAGTTGATGAAGATTTCCGAACATATATCCAAAGATCCAGTCTGCCAGACGAAATTGATGGAGATAACCAGAACGAACACAGAGAGCCCCTCTGA 1278 0.41 MEANAAIKESEQHEDEISDSFVCCVCLELLHKPIVLACGHLSCFWCVHKSMDVIRESHCPICRQSYYHFPTICQMLHFLLLKLYPDAYKRRLHQVLEEEKELGYFSPQFDDDICGSQAKIDNPESSHSTATKDPSSNSSNLETCECKEQSGSSNHEGKEGAIIYEDTSNRMPEVMGTTSIAGKKVPENDKHNQQQKITIADVTCTKCKQLLFHPIVLNCGHVFCEVCMMNIDDQVLKCQICQSLHPRGFPKVCLALDHFLKEQFPEEYAKRRDASQFSQVKVKPKISSCSSGNGEAELSGLPSRIHIGVGCDFCGMYPIIGERYKCIDCKEEIGFDLCGDCHKTHSKLPGRFNQQHTPEHRFESVQGFRSVGGWYAHESLEISGHVSEDPSSPNEVDEDFRTYIQRSSLPDEIDGDNQNEHREPL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2179 425 SUPERFAMILY RING/U-box 198 245 - -
Amo06g2179 425 SUPERFAMILY RING/U-box 304 363 - -
Amo06g2179 425 MobiDBLite consensus disorder prediction 391 405 - -
Amo06g2179 425 SMART ring_2 23 62 IPR001841 -
Amo06g2179 425 SMART ring_2 204 241 IPR001841 -
Amo06g2179 425 Pfam Zinc finger, C3HC4 type (RING finger) 22 65 - -
Amo06g2179 425 MobiDBLite consensus disorder prediction 121 148 - -
Amo06g2179 425 SUPERFAMILY RING/U-box 16 73 - -
Amo06g2179 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Amo06g2179 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 273 IPR013083 -
Amo06g2179 425 ProSiteProfiles Zinc finger RING-type profile. 23 63 IPR001841 -
Amo06g2179 425 ProSiteProfiles Zinc finger RING-type profile. 204 242 IPR001841 -
Amo06g2179 425 MobiDBLite consensus disorder prediction 121 159 - -
Amo06g2179 425 Pfam Zinc finger, ZZ type 306 346 IPR000433 GO:0008270
Amo06g2179 425 ProSiteProfiles Zinc finger ZZ-type profile. 306 370 IPR000433 GO:0008270
Amo06g2179 425 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Amo06g2179 425 Gene3D - 301 367 IPR043145 -
Amo06g2179 425 MobiDBLite consensus disorder prediction 384 425 - -
Amo06g2179 425 Pfam RING-type zinc-finger 204 231 IPR027370 -
Amo06g2179 425 ProSitePatterns Zinc finger ZZ-type signature. 311 341 IPR000433 GO:0008270
Amo06g2179 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 9 395 - -
Amo06g2179 425 PANTHER UNCHARACTERIZED 9 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2179 Amo-Chr6 78292869 78303685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2179 6 63 C3H Transcription Factor Family AT1G74990 44.068 3.14e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2179 - - adu:107494469 899.042