Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2169 ATGGACAGGCTCATAAAATTAGACCCATCAAACACAATCTCAATAAGAATTGAACCAAATCAAAAGTGCCATGGTCATGTCACCCTATGCAACGTCATGCACACCATGCCAGTGGCTTTCAACCTCCAACCACAAATAAAATGTCGCTACACAGTGAAGCCACATTCAGGAATCATATCTCCATTATCTACACTCACCGTGGAAATATCCTACAATCTCCCACAAGGATCGACGCTGCCGGACTCTTTCCCTCGCTCCAAAGACACTTTCCTCCTCCACAGTTGTGTGGTCCCTGGCGCAGCCATCAATGAACCTTCCTCCATGGTTGATTGTGTCCCAAGCGAGTGGTTCTCGGCGAAAAAGAAGCAAGTCTTCGTGGATACCGGCATCAAGATCGTGTTTCTTGGATCCACAATTCTGGTTAAGCTCATTGGAGATGATCATGGTTCCATGGATGACATAAGAGAAGTTCTAGAACGGAGCGATCCCTCGTGGAAAGCGGTTGATTCGATCGACTCGAACGGCGAAACGTTGCTCCATTTGGCGATTTCGCGGAAGAGAGCGGATGTTGTTCAGTTGCTACTAGAATTTGAGGCTAACTTAGAGGCGCGAAACGGTTCTGGATCAACGCCACTAGAGGCTGCAGCATCTTCAGGTGCAGCCTTAATAGCTGAGCTTCTATTAGCTCACAAGGCCAACATAGAAAGACAAGAAACTTCGACATTTGGACCCATCCACGTCGCTGCTAAACAAGGACACTGCGAAGTTTTGAGGCTCTTGTTACTCAAAGGTGCAAGAGTGGACTCGCTCACAAAAGATGGCAACACAGCGTTACACCTTGCGGTTGAAGAAAATAAAATAGAATGCGTTAAGCTCTTACTAGCAAACGGTGCCAGAACCGACATTCGCAACGCCGGCAAAGGCGACACCGTCTTACACATAGCAGCATCCACCGGGGATCATAACATGGTCGAACTCTTGCTACGAAACGGTGTGAACAAGTATGTTAGAAATGATTCATCAAAAGCTGCATATGATGTTGCAGCAGAGAAAGGACACTCTAGAATCTTCGATGCGCTGAGGCTCGGCGACGATTTGTGCATTGCTGCAAGGAAAGGAGAAGTGAGATCAATACAAAAGTTGCTTGAGAAGGGTGCGTTTGTCAATGGTAGGGACCAGAATGGGTGGACTCCGTTGCACAGGGCTTGTTTCAAAGGGAGGATCGACGCAGTGCACGTGCTTTTGGAGAAAGGGATTGATTTGAATGCAGAGGATGAAGAAGGGTACACTGCTTTGCACTGTGCTGTTGAATGTGGAAATGCTGATGTGGCAGAGGTTTTGGTGAAGAAAGGTGCTGATGTTGAAGCCAGGAGTAAGAAGGGTATCACTGCTTTGCAGGTGGCCAAGGCGCTTCGCTACGTTGGGATCACAAGAATTCTTGTCAATGGTGGTGCTAGTACTTTGGATCATCAAATGGTGGTGCCAGATTCCGGTGCAGTGGTTCCAATTAAGAGTAAAATTGATGCTAATTATTAG 1536 0.4714 MDRLIKLDPSNTISIRIEPNQKCHGHVTLCNVMHTMPVAFNLQPQIKCRYTVKPHSGIISPLSTLTVEISYNLPQGSTLPDSFPRSKDTFLLHSCVVPGAAINEPSSMVDCVPSEWFSAKKKQVFVDTGIKIVFLGSTILVKLIGDDHGSMDDIREVLERSDPSWKAVDSIDSNGETLLHLAISRKRADVVQLLLEFEANLEARNGSGSTPLEAAASSGAALIAELLLAHKANIERQETSTFGPIHVAAKQGHCEVLRLLLLKGARVDSLTKDGNTALHLAVEENKIECVKLLLANGARTDIRNAGKGDTVLHIAASTGDHNMVELLLRNGVNKYVRNDSSKAAYDVAAEKGHSRIFDALRLGDDLCIAARKGEVRSIQKLLEKGAFVNGRDQNGWTPLHRACFKGRIDAVHVLLEKGIDLNAEDEEGYTALHCAVECGNADVAEVLVKKGADVEARSKKGITALQVAKALRYVGITRILVNGGASTLDHQMVVPDSGAVVPIKSKIDANY* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2169 511 SUPERFAMILY PapD-like 2 138 IPR008962 -
Amo06g2169 511 Gene3D - 145 362 IPR036770 -
Amo06g2169 511 ProSiteProfiles Ankyrin repeat profile. 307 339 IPR002110 GO:0005515
Amo06g2169 511 SUPERFAMILY Ankyrin repeat 168 487 IPR036770 -
Amo06g2169 511 PRINTS Ankyrin repeat signature 395 410 IPR002110 GO:0005515
Amo06g2169 511 PRINTS Ankyrin repeat signature 443 457 IPR002110 GO:0005515
Amo06g2169 511 ProSiteProfiles Ankyrin repeat region circular profile. 394 426 - -
Amo06g2169 511 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Amo06g2169 511 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 494 - -
Amo06g2169 511 ProSiteProfiles Ankyrin repeat profile. 207 239 IPR002110 GO:0005515
Amo06g2169 511 ProSiteProfiles Ankyrin repeat region circular profile. 427 459 - -
Amo06g2169 511 ProSiteProfiles Ankyrin repeat profile. 394 426 IPR002110 GO:0005515
Amo06g2169 511 Pfam MSP (Major sperm protein) domain 5 110 IPR000535 -
Amo06g2169 511 Gene3D Immunoglobulins 1 135 IPR013783 -
Amo06g2169 511 ProSiteProfiles Ankyrin repeat profile. 427 459 IPR002110 GO:0005515
Amo06g2169 511 ProSiteProfiles Ankyrin repeat region circular profile. 307 333 - -
Amo06g2169 511 Pfam Ankyrin repeats (3 copies) 244 303 IPR002110 GO:0005515
Amo06g2169 511 Pfam Ankyrin repeats (3 copies) 162 237 IPR002110 GO:0005515
Amo06g2169 511 Pfam Ankyrin repeats (3 copies) 366 457 IPR002110 GO:0005515
Amo06g2169 511 ProSiteProfiles Ankyrin repeat region circular profile. 174 205 - -
Amo06g2169 511 ProSiteProfiles Ankyrin repeat region circular profile. 240 268 - -
Amo06g2169 511 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 494 - -
Amo06g2169 511 ProSiteProfiles Ankyrin repeat region circular profile. 207 235 - -
Amo06g2169 511 ProSiteProfiles Ankyrin repeat profile. 174 206 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 460 490 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 427 456 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 394 423 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 174 203 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 307 336 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 361 390 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 240 269 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 207 236 IPR002110 GO:0005515
Amo06g2169 511 SMART ANK_2a 273 302 IPR002110 GO:0005515
Amo06g2169 511 Pfam Ankyrin repeat 308 333 IPR002110 GO:0005515
Amo06g2169 511 Gene3D - 365 497 IPR036770 -
Amo06g2169 511 ProSiteProfiles Ankyrin repeat profile. 240 272 IPR002110 GO:0005515
Amo06g2169 511 ProSiteProfiles Ankyrin repeat profile. 273 305 IPR002110 GO:0005515
Amo06g2169 511 ProSiteProfiles Ankyrin repeat region circular profile. 273 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2169 Amo-Chr6 78019319 78025100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2169 307 468 Miscellaneous Gene Families AT2G31820 34.225 8.77e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2169 - - ahf:112754810 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2869 16 126572177 126574953 Amo06g2169 06 78019319 78025100 hybridization
Amo06g2169 06 78019319 78025100 Amo10g3068 10 96418172 96430177 PCT
Amo10g3068 10 96418172 96430177 Amo06g2169 06 78019319 78025100 PCT