Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2097 ATGAGCAAGAGTACTGCTACTACCACACCGTGCTGCAGCAAAGTTGGGATCAAGAAAGGACCATGGAGCGCCGAGGAAGACGAGATCCTCTCCAAATTTGTCCAGAAGGAAGGGGAGGGGCGGTGGCGTACGCTCCCCAAGAGGGCCGGGCTGCAGCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGTCCCTCCGTCAAGCGAGGCCAGATCGCTCCTGACGAGGAGGATCTCATCCTCCGCCTTCACCGTCTCTTGGGCAACAGGTGGGCTTTGATAGCTGGCAGATTACCTGGCAGGACTGATAACGAGATCAAGAATTACTGGAATACCCATCTAAGCAAGAAGCTCATAAAGCGAGGCATAGATCCAAGAACCCATAAGCCATTAATCACCACCAATTATTCTACTACTCCTGTTACTACTTCAAATGGAGGTCACCAACCTACGATGACTGTGAATCCTGCGTCAGAAATTGGTAATGTCAACAACAGCAAATTTGATTATGCTCCAATAATTAGTGCTGATTGGGAAGCAGAATTTAGCAATGCACTTATAAATCAACAAGATGGTTCATCATCATCATCACCTCCTAATAAAATTTGCATGTTATAA 627 0.4864 MSKSTATTTPCCSKVGIKKGPWSAEEDEILSKFVQKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWALIAGRLPGRTDNEIKNYWNTHLSKKLIKRGIDPRTHKPLITTNYSTTPVTTSNGGHQPTMTVNPASEIGNVNNSKFDYAPIISADWEAEFSNALINQQDGSSSSSPPNKICML* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2097 208 MobiDBLite consensus disorder prediction 133 152 - -
Amo06g2097 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Amo06g2097 208 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 168 - -
Amo06g2097 208 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 6 168 - -
Amo06g2097 208 SMART sant 71 119 IPR001005 -
Amo06g2097 208 SMART sant 18 68 IPR001005 -
Amo06g2097 208 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Amo06g2097 208 Pfam Myb-like DNA-binding domain 76 117 IPR001005 -
Amo06g2097 208 Gene3D - 76 141 - -
Amo06g2097 208 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Amo06g2097 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Amo06g2097 208 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Amo06g2097 208 Gene3D - 18 71 - -
Amo06g2097 208 CDD SANT 77 117 IPR001005 -
Amo06g2097 208 CDD SANT 21 66 IPR001005 -
Amo06g2097 208 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2097 Amo-Chr6 76264204 76266383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2097 8 192 MYB Transcription Factor Family AT3G13540 59.223 6.02e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo06g2097 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2097 K09422 - egr:104443016 265.003