Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2079 ATGCATATAGGTCAAACAGATACAACTTCAGTGAAATGTCTAATCAACAGCATATCTCGATTCCTTCATCTGGTTTCTTGCCAAATCGTGAAGCCTGCGCCTTTTCAGAAGATCTGTCATAATATGGTCGGGGTGTTAAAGCGACTGAAGCCAGTGCTTGATGATGTAATGGACTACAAACTCCCYTTTCACCAAAATATGTCTAAAGAGTGTGAAGAATTGGATGRGCGGATCAATGAAGCTAGAGACTTCATCGAAAAATGGGGTCCAAAGATGAGCAAGATTCTTAGTGTTATTCAAAGCAGCACATTGTTGATTAAGTTGCAGAGCACATCACTTGACATATGTCACATGATAGTTAGATCCCTACAGTCACCTCCYTCTGCTTCGGTTTTGGCTAATCTTCAGAACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTTTATATAGAAGAAGCACTAAGAAACCAGAGAGATAATGTTCAACCTTCCAACGAGCTTCTGAAGGAAATTGCCGAGTTACTAAAATTGACATCAAACGAGGAGCTCTTGAAAGAAAGTATCGTCGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGAAAGGGGACTTGGATGAAATCAATGAAATTGTGAATCTTGTCCGCAATTTACGCGATTATGTAATGAGAACTGAGTCCCTTGAAGTCAAAACCGGTCTCTCAATCCCTCCATACTTCCGCTGCCCTTTATCATTGGAACTCATGATGGATCCTGTTATTGTGGCTTCGGGTCAAACATATGACAGGCAATCAATCCAAAAGTGGCTAGATAACGGGCTAAATGTTTGTCCCAAGACTCGTCAGAAGCTCAATCATATGAATCTTACTGCCAATTATACCGTCAAAGCTATGATTGCAAATTGGTGTCAGGAAAACAGTGTCAAGCTTTGTAGTAACTCGCTGCTCGATAAATCTTCTTATATCACAACCCCTGCAGATCATTCATTGTCTCATGATTTAGCTAATAAATGTGGTTTCAAGTCTATGAATATCGATTCCATCTCAAGGTCATCTCTTCAAAATGGAAATGGAAATGAGAAACCAAAGGGTGATAATTTTGTCAGATCAAGTGAAGAGTATAATGGATGCCGGAGCGGAACAGTGGAAAGATGTGATCAGCAATCATCCGATGTTCACAGCAGAAGTGAATCATCATTTTCCAGTTCAATATCTAGTACTGATTGCATACTTCCAGTTTCAGGACAGGCGTCCGGAATATCCGATAAGCCGCAAAATGTTGACAATGTTGTTGGGAACAAACAAAGTCCTGCATCGAGAATCCAAGGGATGAGAAATGATAATATTATTATGAACAATAATAACATTAATACTAGTGCTAAGCAAAATGATTCAAGAGTTGATTCACATCCTATATTGAACTCGGGGGCCAGTGAAGTGGCCACTTCATCTCATATTAATAAGTTGATCGAAGAACTTCGCAGCCAATCAGTTGAAGTGCAAACCATGGCTGCAGAAGAATTGAGGCTTCTTACAAAGAATGACATGGAAAACCGAATTATTGTGGGGCGGTGTGGGGCTGTTGAGCCTTTACTTTCGCTTCTGTATTCGGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTGTTAAATTTGTCAATCAATGAAGATAACAAGACTTTGATTATGGAAGCTGGAGCCATAGAACCTCTTATCCATGTTTTGAAGACAGGAAATGATGGTGCCAAAGAAAATTCTGCGGCAGCACTATTCAGCCTCTCTGTAATAGAAAACAACAAAGAAAAAATCGGCCGATCCGGCGCAGTCAAAGCCTTGGTGGATCTTCTTGCCTGGGGAACTCTTAGAGGGAAAAAGGATGCTGCTACTGCTTTATTTAACTTGTCAATATTTCATGATAACAAAGCTCGAATAGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCGGTTGATGGACTCTGCCGATGGAATGGTTGACAAGGCTGTTGCACTTCTGTCAAACCTGTCAACAATTCCAGAGGGCCGGATAGAAATCGCAAGGGAAGGAGGCATCCCCTTATTAGTTGAAATTGTTGAAACAGGTTCACATAGGGGAAAGGAGAATGCTGCTTCTGTTCTGTTACAGTTATGCCTTCATAGTACCAAGTTTTGTATTCTTGTTTTGCAAGAAGGAGCTGTACCTTCCCTAGTTGCATTATCTCAATCCGGTACGCCGAGAGCCAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGCAATCAGCGCGAAGGAGCTGCRGCGAAYGGAAAATCYTGA 2331 0.411 MHIGQTDTTSVKCLINSISRFLHLVSCQIVKPAPFQKICHNMVGVLKRLKPVLDDVMDYKLPFHQNMSKECEELDXRINEARDFIEKWGPKMSKILSVIQSSTLLIKLQSTSLDICHMIVRSLQSPPSASVLANLQNYIQELQCLKKETAMVYIEEALRNQRDNVQPSNELLKEIAELLKLTSNEELLKESIVVEKERLNAEVNKMKGDLDEINEIVNLVRNLRDYVMRTESLEVKTGLSIPPYFRCPLSLELMMDPVIVASGQTYDRQSIQKWLDNGLNVCPKTRQKLNHMNLTANYTVKAMIANWCQENSVKLCSNSLLDKSSYITTPADHSLSHDLANKCGFKSMNIDSISRSSLQNGNGNEKPKGDNFVRSSEEYNGCRSGTVERCDQQSSDVHSRSESSFSSSISSTDCILPVSGQASGISDKPQNVDNVVGNKQSPASRIQGMRNDNIIMNNNNINTSAKQNDSRVDSHPILNSGASEVATSSHINKLIEELRSQSVEVQTMAAEELRLLTKNDMENRIIVGRCGAVEPLLSLLYSDMKITQEHAVTALLNLSINEDNKTLIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKEKIGRSGAVKALVDLLAWGTLRGKKDAATALFNLSIFHDNKARIVQAGAVKFLVRLMDSADGMVDKAVALLSNLSTIPEGRIEIAREGGIPLLVEIVETGSHRGKENAASVLLQLCLHSTKFCILVLQEGAVPSLVALSQSGTPRAKEKAQQLLSHFRNQREGAAANGKS* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2079 776 Gene3D - 565 773 IPR011989 -
Amo06g2079 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 613 655 IPR000225 GO:0005515
Amo06g2079 776 MobiDBLite consensus disorder prediction 354 378 - -
Amo06g2079 776 Gene3D - 438 564 IPR011989 -
Amo06g2079 776 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Amo06g2079 776 PANTHER U BOX DOMAIN-CONTAINING 11 771 - -
Amo06g2079 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 572 614 IPR000225 GO:0005515
Amo06g2079 776 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Amo06g2079 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 654 695 IPR000225 GO:0005515
Amo06g2079 776 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 771 - -
Amo06g2079 776 SMART arm_5 683 723 IPR000225 GO:0005515
Amo06g2079 776 SMART arm_5 602 642 IPR000225 GO:0005515
Amo06g2079 776 SMART arm_5 520 560 IPR000225 GO:0005515
Amo06g2079 776 SMART arm_5 561 601 IPR000225 GO:0005515
Amo06g2079 776 SMART arm_5 643 682 IPR000225 GO:0005515
Amo06g2079 776 Coils Coil 196 216 - -
Amo06g2079 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Amo06g2079 776 Coils Coil 64 75 - -
Amo06g2079 776 Coils Coil 128 148 - -
Amo06g2079 776 Coils Coil 77 84 - -
Amo06g2079 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Amo06g2079 776 SUPERFAMILY RING/U-box 239 316 - -
Amo06g2079 776 MobiDBLite consensus disorder prediction 419 477 - -
Amo06g2079 776 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Amo06g2079 776 Coils Coil 491 511 - -
Amo06g2079 776 CDD RING-Ubox_PUB 245 287 IPR045210 -
Amo06g2079 776 Pfam Armadillo/beta-catenin-like repeat 561 600 IPR000225 GO:0005515
Amo06g2079 776 Pfam Armadillo/beta-catenin-like repeat 522 559 IPR000225 GO:0005515
Amo06g2079 776 SUPERFAMILY ARM repeat 487 763 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2079 Amo-Chr6 75871980 75876710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2079 7 776 U-box Gene Family AT3G54790 51.527 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2079 - - gmx:100800949 1081.24