Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2078 ATGGCAACATTTGGAGGCACAACACAGAAGTGCAGAGCATGTGAAAAGAAGGTGTATTGGGTGGAACAGCTCACTGCTGACAACAAGGTCTACCATAAATCTTGCTTCAGATGTCACCATTGCAAGGGTACCCTCAAGAATGATAACACAAATTCTTCTTTATGCAGCAGTAATCATGAAAACTTTGAGATACATGCTACAAGCATTATTTATTGTCATCTAATGGAACTTTCATAG 237 0.3924 MATFGGTTQKCRACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKNDNTNSSLCSSNHENFEIHATSIIYCHLMELS* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2078 78 ProSiteProfiles LIM domain profile. 9 78 IPR001781 -
Amo06g2078 78 Gene3D Cysteine Rich Protein 3 75 - -
Amo06g2078 78 PANTHER OS06G0237300 PROTEIN 1 52 IPR045268 GO:0051015
Amo06g2078 78 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Amo06g2078 78 Pfam LIM domain 11 57 IPR001781 -
Amo06g2078 78 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Amo06g2078 78 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 52 - -
Amo06g2078 78 SMART lim_4 10 65 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2078 Amo-Chr6 75807384 75808757 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo06g2078 LIM 2.6e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2078 K09377 - gmx:100805084 102.834