Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2055 ATGATGATGAGCTCACAGCACTTCAACAATGGTGGAAGTGATGGTGGTGGTAGGTTCTTCCCTTCACTCCCTGTTCCTCCTTCTTCTTTTCCCCTTGTTGTTCCTCCTCCTCCACCTTCTCTGTCCAACACTTCAGGGGTTGTTGTGATGAGTCATCATCATCATCATGCAAATGGGGTAGAGGATCCTGAACTTATCATGATGGGGCTTCAGATTTTGAGCTCTTCAAAGTGGAAAATGGGAACCAACAACAACAGTGAAAACAAGAGCTTGTCTTTGAAGATTGGCGATGAGGAAGATGAAATAGATGGAGGAGAAGAAAGAGAAGAAGGTAATAGTAAAGGGCCTTGTTCTTCTTCTTCCAATGGAGGAAAAATTGGGCATGTGAAACTCTGTGCTAGAGGCCATTGGAGACCTGCTGAAGATGCACAACTCAAGGCCCTTGTTTCTCAATATGGCCCTCAAAACTGGAACCTCATTGCAGAACATCTCAAAGGAAGATCAGGTAAGAGTTGTAGACTAAGGTGGTTTAATCAGCTAGATCCAAGAATTAACAGAAGAGCTTTCTGTGAAGAAGAAGAGGAGAGACTCTTAACTGCACACAGAATGTATGGTAACAAATGGGCCATGATTGCAAGACTGTTCCCTGGAAGAACAGATAATGCAGTCAAGAATCACTGGCATGTGATCATGGCTCGAAAGCAGAGAGAGCAATCAAGCATGTATAGAAGGAGAAAACCTACTCCTGTGTTTTCTCCTCCTTCTGTTGAAGAAGAAGGTGTTGTTCTTCTTCCTCCACCCAAGGCTTTGGAATTGACTCTATCATCAAACAATAATAATGTAGCCAGTGATGATCAGTTAACTATCTCAGATGAATCTGTCTCAACAGAACTAACTGCTCCTACTTCATTTTTTCATAAGATTGGTGAAGGTGTGGGTGGAATGAATGTAGGTTATGAGAAATTCTATGGTGGTTGGAATAATGGAAATCTTAAGTGTGTGGACCAATCAAATTTTTCAGAATCAAATAACTCATCATCAGAAGTCTCAGTATCTGAGTCAGTAGGCACCACCAATAGGTCCTATCTCTCAATTTCTGGAAAGAGTGAAAACCATAACATCAGGAACAAGATTAACAACATGCCAGCATTCATTGATTTTCTTGGGGTTGGAGCTACATAA 1182 0.4162 MMMSSQHFNNGGSDGGGRFFPSLPVPPSSFPLVVPPPPPSLSNTSGVVVMSHHHHHANGVEDPELIMMGLQILSSSKWKMGTNNNSENKSLSLKIGDEEDEIDGGEEREEGNSKGPCSSSSNGGKIGHVKLCARGHWRPAEDAQLKALVSQYGPQNWNLIAEHLKGRSGKSCRLRWFNQLDPRINRRAFCEEEEERLLTAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARKQREQSSMYRRRKPTPVFSPPSVEEEGVVLLPPPKALELTLSSNNNNVASDDQLTISDESVSTELTAPTSFFHKIGEGVGGMNVGYEKFYGGWNNGNLKCVDQSNFSESNNSSSEVSVSESVGTTNRSYLSISGKSENHNIRNKINNMPAFIDFLGVGAT* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2055 393 Gene3D - 134 185 - -
Amo06g2055 393 PANTHER OS08G0435700 PROTEIN 82 393 - -
Amo06g2055 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 235 IPR017930 -
Amo06g2055 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 180 IPR017930 -
Amo06g2055 393 MobiDBLite consensus disorder prediction 79 122 - -
Amo06g2055 393 Pfam Myb-like DNA-binding domain 187 229 IPR001005 -
Amo06g2055 393 Pfam Myb-like DNA-binding domain 134 180 IPR001005 -
Amo06g2055 393 ProSiteProfiles Myb-like domain profile. 181 231 IPR001005 -
Amo06g2055 393 SUPERFAMILY Homeodomain-like 134 227 IPR009057 -
Amo06g2055 393 ProSiteProfiles Myb-like domain profile. 134 180 IPR001005 -
Amo06g2055 393 CDD SANT 137 178 IPR001005 -
Amo06g2055 393 MobiDBLite consensus disorder prediction 1 22 - -
Amo06g2055 393 SMART sant 133 182 IPR001005 -
Amo06g2055 393 SMART sant 185 233 IPR001005 -
Amo06g2055 393 Gene3D - 188 246 - -
Amo06g2055 393 PANTHER MYB PROTEIN-RELATED 82 393 - -
Amo06g2055 393 CDD SANT 191 228 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2055 Amo-Chr6 74659264 74660609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2055 133 393 MYB Transcription Factor Family AT1G69560 49.049 1.09e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo06g2055 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2055 K09422 - twl:119996400 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2750 16 122184974 122186673 Amo06g2055 06 74659264 74660609 hybridization