Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2038 ATGCTCTGTCAGCGGCGCCTCTCAGCCTTGCATCGCCGTCGCACCGAAGCTCCGTCACACTCTTTCCCGGATCTTCTCCCTGTGTTGCTCGCGTCTCTCCTTTCAAACCCTAACCTGCAATCTGCTAATTTAGCCAAAATCTTCTCCGTCACACTCTCTTCGTTCCTTCTCCTCCTCCGCCGCCGCCGCCTCTGCTGCCATTGTTCGGTCGTTCGCCACTACCTCGCACCACAACAACCACCGCTAGAACCACAAGACCCGAAGGAGGCTGAGGCAAAGCTGGCGATGCTCCGAAGGGGCTACGCAAAGCAGGTGAAGGAGGTTCGCAATCTGTACATCCACGAAATGGAGCTGCTTCAGATCGAGAAGGAGCTCAAGGACGAAGCTTGCAGAGAATCCCTTAGAGTTGCCAATGAGGAGCGCAAGAAGCTCAAGGCCGAAGCTGCGCAGATTAGGGCTCCGGAGCGAAAGATCGCACAACAAGAATTCAGAGAAACACTCCTATTTGATGGTCACAATGGAACTGCTGCTTCTATTTATGCCAAGGAGAATCTTCTAAACAACATTTTAAGTGCAATTCCTTCAGATCTTAACAGAGATGAGTGGATAGCAGCATTGCCCAGGGCTTTGGTTGTAGGATTTGTGAAAACTGACAAAGATTTTCAACAAAAAGCCTTTACTAATTATTTAGTTGTGTGGCAAATTGAAGTACTTCTGGAATATTCTGAGTATATTGACTATCTGTTTTTGGGAGATTATGTTGATAGAGGACAGTACAGCTTGGAAACCATTACCTTGCTGCTTGCATTTAAGATTGAGTCTCCTGAGAATGTTCACCTGATACGTGGTAACCATGAAGCTGCTGACATAAATGTACTATTTGGTTTTCGTATTGACTGCATTGAAAGGATGTTAAATCTAAGAAGAACAAAAGCATTGCTGAGTGTGAACTTCTCTCAAGAGCTTCAAAAGCTTGAGGAGTATCGCATGAACCAGAAATCCATTGATTCAATGGGTGATTACATCAAAGGCCAAGTAATAGGGTATCTGGATCAGTTTGGCACTTCACTTCCTATTAAGATTCGAGACTATAAAAAAGACTGGAAATTGCAAGTAAATCAACTTGTTGCTGGAAATTATTACCCTATCAACCTTGGGATTTACATGAAAGATAAAAGTAAAGAGCTCTCTATATTGGTAGAT 1203 0.4447 MLCQRRLSALHRRRTEAPSHSFPDLLPVLLASLLSNPNLQSANLAKIFSVTLSSFLLLLRRRRLCCHCSVVRHYLAPQQPPLEPQDPKEAEAKLAMLRRGYAKQVKEVRNLYIHEMELLQIEKELKDEACRESLRVANEERKKLKAEAAQIRAPERKIAQQEFRETLLFDGHNGTAASIYAKENLLNNILSAIPSDLNRDEWIAALPRALVVGFVKTDKDFQQKAFTNYLVVWQIEVLLEYSEYIDYLFLGDYVDRGQYSLETITLLLAFKIESPENVHLIRGNHEAADINVLFGFRIDCIERMLNLRRTKALLSVNFSQELQKLEEYRMNQKSIDSMGDYIKGQVIGYLDQFGTSLPIKIRDYKKDWKLQVNQLVAGNYYPINLGIYMKDKSKELSILVD 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2038 401 SUPERFAMILY Metallo-dependent phosphatases 247 314 IPR029052 -
Amo06g2038 401 SUPERFAMILY PP2C-like 163 228 IPR036457 -
Amo06g2038 401 PRINTS Serine/threonine phosphatase family signature 247 274 IPR006186 GO:0016787
Amo06g2038 401 PRINTS Serine/threonine phosphatase family signature 280 304 IPR006186 GO:0016787
Amo06g2038 401 ProSitePatterns Serine/threonine specific protein phosphatases signature. 281 286 IPR006186 GO:0016787
Amo06g2038 401 Gene3D - 342 401 - -
Amo06g2038 401 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 243 306 - -
Amo06g2038 401 Gene3D - 230 339 IPR029052 -
Amo06g2038 401 Gene3D - 122 229 IPR036457 -
Amo06g2038 401 Pfam Calcineurin-like phosphoesterase 247 312 IPR004843 GO:0016787
Amo06g2038 401 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL1-RELATED 243 306 - -
Amo06g2038 401 SMART pp2a_7 181 395 IPR006186 GO:0016787
Amo06g2038 401 SUPERFAMILY Galactose mutarotase-like 351 401 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2038 Amo-Chr6 74292039 74294910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2038 168 232 PP2C-type Phosphatase Gene Family AT1G47380 78.462 3.22e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2038 - - aip:110266955 245.358