Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2034 ATGGGAAGGCCTCCATGCTGTGACAAAGTTGGAATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTCCCTACTAACACTGGGTTGTCAAGATGCAGCAAAAGTTGTAGGCTAAGGTGGACAAATTATCTAAGGCCAGGAATCAAGAGAGGAAACTTCACTCCCCATGAAGAAGGAATGATTATTCACTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGACAATGACATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTCAAGAAATTCCAACAACAACAAACATCTTCCATGGATTCTTCTTCTCATCAGCACCTTCAAGCGTCATCTAAGAGCTTCAGTGACAGAATTTCATCATCAGATAATAAGTCTTCTACTCAGTGTTCATCAATTACCACATCCTATGCATCAAGCACTGAGAACATTTCAAGGCTTCTAGAAGGTTGGATGAGAACTTCTCCAAAACCATCTTCATCATCTTCTCCATTCATCATCAAAGGAGCAGGAGGAGGAGGACCATCATCAAATCATCATGAGATTGATGAAGAAAACAATAACAACAACAATGATAATAATAAGGAGGTTCTTCTAGTCAAGTCTGTTTCTATGCCTGCTTTGAATCTTGAGCTTCATCATCATCAGAATCATCAAGACTTTGAATCTATTCTTTCCTTTGAGAATCTCAACACTACTACTGCTTCTTGCTGGGACAAATCTACTTGTGATTCTATGCCTAATAATAATCACAAATGTTCTTCAGAACCTGCTGCTGCTACTACTTTTTCTCATCATCATCATCATCATCATGAAATTGAGGAAGAAGAAGAGGACTATGAGGATCAAGAGGAGAGAAAGAATAGTAAGAGTAGTAGGGATAAGAATAATAATGACAATAATAACCCTCCATTGTCATTCCTTGAGAAGTGGCTATTGGATGAGAATGTTGGTCATGGTGAGGAGATCATGGAGTTATCTCCTATCTTCTAA 1074 0.3911 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQQQQTSSMDSSSHQHLQASSKSFSDRISSSDNKSSTQCSSITTSYASSTENISRLLEGWMRTSPKPSSSSSPFIIKGAGGGGPSSNHHEIDEENNNNNNDNNKEVLLVKSVSMPALNLELHHHQNHQDFESILSFENLNTTTASCWDKSTCDSMPNNNHKCSSEPAAATTFSHHHHHHHEIEEEEEDYEDQEERKNSKSSRDKNNNDNNNPPLSFLEKWLLDENVGHGEEIMELSPIF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2034 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 348 - -
Amo06g2034 357 PANTHER TRANSCRIPTION FACTOR MYB60 1 348 - -
Amo06g2034 357 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo06g2034 357 MobiDBLite consensus disorder prediction 118 162 - -
Amo06g2034 357 Gene3D - 69 143 - -
Amo06g2034 357 Gene3D - 13 66 - -
Amo06g2034 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Amo06g2034 357 CDD SANT 16 61 IPR001005 -
Amo06g2034 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Amo06g2034 357 MobiDBLite consensus disorder prediction 119 162 - -
Amo06g2034 357 Coils Coil 293 320 - -
Amo06g2034 357 SMART sant 66 114 IPR001005 -
Amo06g2034 357 SMART sant 13 63 IPR001005 -
Amo06g2034 357 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo06g2034 357 MobiDBLite consensus disorder prediction 179 220 - -
Amo06g2034 357 CDD SANT 69 111 IPR001005 -
Amo06g2034 357 MobiDBLite consensus disorder prediction 179 193 - -
Amo06g2034 357 MobiDBLite consensus disorder prediction 275 333 - -
Amo06g2034 357 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo06g2034 357 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo06g2034 357 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2034 Amo-Chr6 74088500 74090084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2034 1 161 MYB Transcription Factor Family AT5G62470 69.231 4.64e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo06g2034 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2034 K09422 - gmx:100802204 366.696