LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo06g1966	ATGGGTTCTCAAGGTGGGGCAGTCCAAGAGGCACAGAGTGGTGGCTCTGGCTCCTTGGCTAGGCAAGGGTCATTGTATAATCTCACACTTGATGAGGTTCAAAACCAGCTTGGAAATTTGGGGAAGCCATTAGGAAGCATGAATCTTGATGAGCTTCTAAAGAGTGTGTTTACGGCTGAGGCTGGAGGTTGTGGTGGTGYTGGTGGTGGTGGTCAAGCCTCTTCTGGATTGGGTTCTGGGACTGATGCTAACATTCAGCAGCAGCATGCTCAGTTAGCTTCGGTTTCATCCCTGAATCGACAAGGGAGCCTAACTGTTTCTGGAGATCTTAGCAAGAAAACCATTGATGAGGTTTGGAGAGATATGCAGAYAAAGAAGAGTGGTGGAAACAGTAATAATAATGATAAGAAAACWKAGGAGACACCYCCYACATTTGGCGAGATGACCCTGGAGGATTTCTTGGTGAAAGCAGGAGTTGTTGCWGAGTCTTTTGCTACTGAGGATAATGCTATGTCAAGGGTTGATTCCAATGTGGCTTCTCAGCACAATGTTTCTGATCAAGTACATTGGATTCAATACCAAATCCCATCAGTGCAGCCGGCACCGCATCTCCAGCATAATCAGCATCAGAAGCAGCAGAATAATATGATTGCTGGTTATATCGCTGGCCCTGTGGTTCAGCAGTCTTTTCCTGTTGTGGTGAATCCGGRTCTGGATGCTGGATACACTGAGACAATGGTGACTATGTCGCCATCTTCTTTGATGGGTACATTATCAGATACCCAGACTCCGGGTCGGAAAAGGGTTGCCTCTGGTACTGTTGTTGAGAAAACTGTGGAGAGGAGACAGAAGAGGATGATAAAGAATAGGGAATCTGCTGCGCGGTCGCGTGCTAGAAAACAGGCTTACACACAAGAACTGGAGAATAAAGTTTCCCGTTTAGAAGAAGAAAATGAAAGGCTTAYAAGACAGCAGGAGATAGAGAAGGTGTTGCCAAGTGAGCCACCACCAGAGCCCAAGCGTCAACTTCGCCGGACGAGTTCGGGACCCCTTTGA	1056	0.4697	MGSQGGAVQEAQSGGSGSLARQGSLYNLTLDEVQNQLGNLGKPLGSMNLDELLKSVFTAEAGGCGGXGGGGQASSGLGSGTDANIQQQHAQLASVSSLNRQGSLTVSGDLSKKTIDEVWRDMQXKKSGGNSNNNDKKTXETPPTFGEMTLEDFLVKAGVVAESFATEDNAMSRVDSNVASQHNVSDQVHWIQYQIPSVQPAPHLQHNQHQKQQNNMIAGYIAGPVVQQSFPVVVNPXLDAGYTETMVTMSPSSLMGTLSDTQTPGRKRVASGTVVEKTVERRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLXRQQEIEKVLPSEPPPEPKRQLRRTSSGPL*	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo06g1966	351	MobiDBLite	consensus disorder prediction	64	85	-	-
	Amo06g1966	351	MobiDBLite	consensus disorder prediction	316	351	-	-
	Amo06g1966	351	Coils	Coil	297	321	-	-
	Amo06g1966	351	Coils	Coil	323	331	-	-
	Amo06g1966	351	MobiDBLite	consensus disorder prediction	316	341	-	-
	Amo06g1966	351	CDD	bZIP_plant_BZIP46	281	326	-	-
	Amo06g1966	351	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	284	299	IPR004827	GO:0003700\|GO:0006355
	Amo06g1966	351	Pfam	bZIP transcription factor	281	323	IPR004827	GO:0003700\|GO:0006355
	Amo06g1966	351	PRINTS	cAMP response element binding (CREB) protein signature	276	292	-	-
	Amo06g1966	351	PRINTS	cAMP response element binding (CREB) protein signature	294	314	-	-
	Amo06g1966	351	PRINTS	cAMP response element binding (CREB) protein signature	314	331	-	-
	Amo06g1966	351	Gene3D	-	279	331	-	-
	Amo06g1966	351	MobiDBLite	consensus disorder prediction	125	140	-	-
	Amo06g1966	351	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	279	324	IPR004827	GO:0003700\|GO:0006355
	Amo06g1966	351	PANTHER	BZIP TRANSCRIPTION FACTOR	2	349	-	-
	Amo06g1966	351	SMART	brlzneu	277	349	IPR004827	GO:0003700\|GO:0006355
	Amo06g1966	351	SUPERFAMILY	Leucine zipper domain	281	326	IPR046347	GO:0003700\|GO:0006355
	Amo06g1966	351	MobiDBLite	consensus disorder prediction	117	145	-	-
	Amo06g1966	351	PANTHER	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	2	349	IPR043452	GO:0003700\|GO:0045893

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo06g1966	Amo-Chr6	70962493	70966278	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo06g1966	1	351	bZIP Transcription Factor Family	AT3G56850	51.685	2.15e-102	301

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Amo06g1966		bZIP_1	1.6e-12	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo06g1966	K14432		-	gmx:100783666	395.201