Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1962 ATGTTGAAAAAGGTATTCGCACCACACGTGCCACACGGGTGGGATCCACCACGTAGGTTAACGACAACGTCCGTTTTGAAACGCCGCCGTCTGTTCAACGCTGAGGCTCCTCAACAGCTTGCTCTCTCTTTTTCTCTCTCTCGATTCCAATCATTTCCTGGAAGACAAAAACGACTTCAGAAAACACGCATTCCCCCAAAATTGGTGAACACAGCTCTTCACACTTCGGAAGCTCCTCCTCCCTCCTCGGGCGATTCGATTCGTCTTCCTCTTGTTTATTGGGTTTCTTCGATCTCTCCTCAAACCCTCTTAAATCCCCTCCGCGCTCGGATTCGCCTCTACAATTTTGAGTCTCTAGCAACTATGTATCACGCGAAGAAGTTCTCGTCTGCAACGATGGTGCCGCATAAACCTCAAGGTGGTGGCGAACAAGTTGGAAATGTTGGGGTTTTGGATGGATCTGCGGTGAGGAATGCGGGACCTGCTAGTTCTGGTGGAAATGGGAAGCAGCGTTTGCGATGGACATCTGAACTTCATGATCGTTTTGTGGATGCCATTACGCAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTGCGAGTGATGGGTGTACCTGGACTTACTATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTAGCAAAGTACTTGCCTGATTCTCCAGCTGATGGTAAAGACTCTAAAGATGAAAAAAGGACATCTGGAGACACTGTTACTGGCATAGATTCTTCTCAGGGGTTGCAAATCAATGATGCTCTAAGAATGCAGATGGAGGTTCAGAAACGTCTTCATGAACAGCTTGAGGTGCAAAAGCAGTTACAAATGAGAATCGAAGCGCAGGGGAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGGAGTACCTTGACAAATTCAGACACATTGCCATTGTCCCACGATAAGCAAAATAATCCCCCGTCAGAGCCTTCTGGATCAAGCGATGCCATCGCAGATTCCATGTCTCCACTCAAAAAACAGAGAATCGATGATGGTTCAAAGGATGGCTTTGCTGCTTCTCAGGTGACAACAAAGACTTCACAAAAGACTGATTGTAGTGTTGATCAGTTGGACTCATGA 1134 0.4612 MLKKVFAPHVPHGWDPPRRLTTTSVLKRRRLFNAEAPQQLALSFSLSRFQSFPGRQKRLQKTRIPPKLVNTALHTSEAPPPSSGDSIRLPLVYWVSSISPQTLLNPLRARIRLYNFESLATMYHAKKFSSATMVPHKPQGGGEQVGNVGVLDGSAVRNAGPASSGGNGKQRLRWTSELHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPDSPADGKDSKDEKRTSGDTVTGIDSSQGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTNSDTLPLSHDKQNNPPSEPSGSSDAIADSMSPLKKQRIDDGSKDGFAASQVTTKTSQKTDCSVDQLDS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1962 377 MobiDBLite consensus disorder prediction 308 338 - -
Amo06g1962 377 MobiDBLite consensus disorder prediction 355 377 - -
Amo06g1962 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 226 IPR017930 -
Amo06g1962 377 PANTHER OS05G0491500 PROTEIN 123 363 - -
Amo06g1962 377 MobiDBLite consensus disorder prediction 228 255 - -
Amo06g1962 377 SUPERFAMILY Homeodomain-like 169 223 IPR009057 -
Amo06g1962 377 MobiDBLite consensus disorder prediction 308 377 - -
Amo06g1962 377 Coils Coil 260 280 - -
Amo06g1962 377 MobiDBLite consensus disorder prediction 229 246 - -
Amo06g1962 377 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 123 363 IPR044848 GO:0003700
Amo06g1962 377 Pfam Myb-like DNA-binding domain 172 222 IPR001005 -
Amo06g1962 377 Pfam MYB-CC type transfactor, LHEQLE motif 257 303 IPR025756 -
Amo06g1962 377 Gene3D - 168 227 - -
Amo06g1962 377 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 169 224 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1962 Amo-Chr6 70822263 70825847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1962 149 349 G2-like Transcription Factor Family AT3G13040 43.182 2.05e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo06g1962 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1962 - - gmx:100783132 402.519