Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1954 ATGGGTCCTCAAAATTCTCTATTAGTGTCTAACAAAATACAAGCAACTGTTAAGAAGCAGCTCATAAATAGGTTTAAAGAGAGTATTATTGAGGGTCAAACATACCGAATGTCATATTTTAGTGTTGTTCCAAACCAAGGCAATTATAGGGCAGCAGAACATGAGTTTAAGTTGGTTTTTCTTAACCGTACAACTGTTATTCCTGTCCCTGACGATGATATCCCAAAGACATGTTTCAGTTTCTGTCCCTTTGATGAGCTCTTGAAAATGACTGAAGATTATGTTTACTTAGTTGATGTTATTGGTTTGCTGACTTCTGTTGGTGAAGAGAAAGAGTACGTGAAAGATGCGAAAGTGATGAAGATGATTGTTCTTGAGTTATCTTCAAAAGAGTTGACAATACGCTGTGCTCTGTTTGGGGAGTATGTGGATGAAGTGCATCGTTTCTTAGGTTCTGGCTATATGGAGCAGCCAGTTGTTGTGATCCAACTTGCCAAAGTTAAATTCTTTAGGGGACAAGTTGGTCTCCAAAATGTTATGCATGCTATTCGGCTGTTCTTTAATCCAGATTTGTCTGAAGTCGTTAGATTTCAAAAACAGTATGATTGA 609 0.376 MGPQNSLLVSNKIQATVKKQLINRFKESIIEGQTYRMSYFSVVPNQGNYRAAEHEFKLVFLNRTTVIPVPDDDIPKTCFSFCPFDELLKMTEDYVYLVDVIGLLTSVGEEKEYVKDAKVMKMIVLELSSKELTIRCALFGEYVDEVHRFLGSGYMEQPVVVIQLAKVKFFRGQVGLQNVMHAIRLFFNPDLSEVVRFQKQYD* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1954 202 CDD RPA1_DBD_A_like 11 66 - -
Amo06g1954 202 Pfam Domain of unknown function DUF223 11 91 IPR003871 -
Amo06g1954 202 PANTHER REPLICATION FACTOR A 1, RFA1 11 202 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo06g1954 202 SUPERFAMILY Nucleic acid-binding proteins 10 73 IPR012340 -
Amo06g1954 202 CDD RPA1_DBD_B_like 99 202 - -
Amo06g1954 202 Gene3D - 9 72 IPR012340 -
Amo06g1954 202 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 11 202 - -
Amo06g1954 202 Gene3D - 73 202 IPR012340 -
Amo06g1954 202 SUPERFAMILY Nucleic acid-binding proteins 79 201 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1954 Amo-Chr6 70577264 70582006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1954 12 202 Core DNA Replication Machinery Family AT2G06510 28.500 3.40e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1954 - - adu:107489369 369.392