Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1938 GATGAAGAGTTAAAATTGCCTGGACACGGTTTCATTTGCATCATCTATGGCCACGTCAGCGCCACCGTAGCCAAGTGGAGACGTTCGACATCGGAGATGGGAGAGCGGACGAGGCTGGTGTTGTGGGACTTTGTGCTGTCCGCGATGTGGGTGTGGTCTGGCGTTGTTGTGAGGATGCTCGTCTTCGATGTGATGCAAGTGGGCCGCCATCACGGTCACCTGGCCGCGGAGATTGTGAAGATGGGGCTCTCTGTGGCCAACATGTTCGTCTTTGCCTTCCTTTCCAATGCCACACGTGGTGGGGCCTACAACCCCCTAACCGTTTTGTCCTCTGCCTTCTCTGCAGGCTTCCGAAGCTTCTTTTACTGTGTTGCTGCCCGGATCCCCGCTCAGGTGCTTGGATCTATAATTGGAGTTAAGCTTTTAATTGATACCATTCCTGAAGTAGGACGTGGACCGCGCTTGAACACTGACATTCATCGGGGTGCCTTGACAGAAGGGTTACTAACGTATGCAATTGTGACCATTTCTCTTGGTCTCACCACGAATCTTCGTGGAGGTTTCTTCATGAAAACATGGATATCCAGTCTCTCGAAGCTAACACTTCATATACTTGGCTCGGATCTTACTGGTGGTTGTATGAACCCTGCCTCTGTAATGGGGTGGGCTTATGCTAGAGGAGATCACATAACAAAGGAGCACATTCTTGTGTACTGGATTGCCCCCATAGAGGCAACTATATTGGCAGTTTGGACATTCAAATTGTTAGTGCAGCCCGTTAAACAAGATAAGACTGCCTCGAAAACTAAATCGGATTAA 819 0.4969 DEELKLPGHGFICIIYGHVSATVAKWRRSTSEMGERTRLVLWDFVLSAMWVWSGVVVRMLVFDVMQVGRHHGHLAAEIVKMGLSVANMFVFAFLSNATRGGAYNPLTVLSSAFSAGFRSFFYCVAARIPAQVLGSIIGVKLLIDTIPEVGRGPRLNTDIHRGALTEGLLTYAIVTISLGLTTNLRGGFFMKTWISSLSKLTLHILGSDLTGGCMNPASVMGWAYARGDHITKEHILVYWIAPIEATILAVWTFKLLVQPVKQDKTASKTKSD* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1938 272 PANTHER AQUAPORIN SIP2-1-RELATED 34 272 IPR044226 GO:0015267
Amo06g1938 272 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1938 272 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1938 272 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1938 272 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1938 272 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1938 272 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1938 272 Pfam Major intrinsic protein 37 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo06g1938 272 PANTHER AQUAPORIN SIP2-1-RELATED 34 272 - -
Amo06g1938 272 SUPERFAMILY Aquaporin-like 37 262 IPR023271 -
Amo06g1938 272 Gene3D Glycerol uptake facilitator protein. 30 272 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1938 Amo-Chr6 70282897 70284457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1938 36 272 Major Intrinsic Protein MIP AT3G56950 57.384 1.45e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1938 K09875 - gmx:100786138 358.221