Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1912 ATGGACCACCAGTACCGCCACGTCATCAGTGCCGGAGCCAGCGATCCCATGCTCCGCACCTCCACTCTACGCACCACCACCTTCTCCTTCCCCCTAGCTCGCTACACCACCCGCCTCATCGCAGCCGACCGCCGCCGCATGCTCCTCGCTGACTGCGCTGACCGCCGATCCGACGACGGCCTCGACTCTTCCGACGATGACGATGGCGGAGGATGCGCGTACTCCAGGCCCGTCCTCGTGTTGGACTTGGTGTGGAACCTGGCTTTCGTCGTCGTGGCTGCCGGCGTGCTCCTCTCCACGCTCCGGGAGCGGCCGGCGACGCCACTGAGGCTGTGGCTCTGTGGCTACGCGTTCGAGTGCGTGCTCCATATTTGCTTCGTGTTCTTCGAGTATCGCAGGAGAATCGGGGATCCTTCGCTGTCTCAGAGTCCGTACAGCATCCTGAAGAGGTTAGAGCCGGTGAACACTCTGGCATCATCTGTCTGGTGGGTGTTTGGATTTTATTGGATTGTTGTGGGCGGCCAAGCACTACTGGAAGATTCTCCGCAACTTTACTGGTTAACAGTGGTGTTTCTAGCCTTTGATGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAATTTTCTTTGCTCTCTTTTGCCTTATCCCAATAATAGCATTAGCTTATGCTATAAGAATCAGGGAAGGTGCATCAGAAGAGGATATTAGGTCACTTCCTAAGTATAGGTTTGGCCAATCAAATTTGTTAGTGTTGGTTGATGACAACAAGCAGCAAATTGAAAAAGCAGGATCAGATTCATACAATGAAAATCTTATCAGTGAACTTTTTCTCGAACCAGATGATTCTGTGAGTACATCTTTTCAGGAATGCTGCATCTGCCTATCCCCTTATGTTGATGGAGCAGAACTGTATCGCCTCCCCTGTACCCATCATTTCCACTGTGGATGCATCAGCCGCTGGCTCCGGACAAAAGCAACTTGCCCACTCTGCAAATTCAATATCCTTAGAGGCGATACGTTAGTCTAA 1032 0.5136 MDHQYRHVISAGASDPMLRTSTLRTTTFSFPLARYTTRLIAADRRRMLLADCADRRSDDGLDSSDDDDGGGCAYSRPVLVLDLVWNLAFVVVAAGVLLSTLRERPATPLRLWLCGYAFECVLHICFVFFEYRRRIGDPSLSQSPYSILKRLEPVNTLASSVWWVFGFYWIVVGGQALLEDSPQLYWLTVVFLAFDVFFIIFCIGMACIIFFALFCLIPIIALAYAIRIREGASEEDIRSLPKYRFGQSNLLVLVDDNKQQIEKAGSDSYNENLISELFLEPDDSVSTSFQECCICLSPYVDGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRGDTLV* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1912 343 PANTHER RING-FINGER UBIQUITIN LIGASE 22 343 - -
Amo06g1912 343 SMART ring_2 292 332 IPR001841 -
Amo06g1912 343 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Amo06g1912 343 SUPERFAMILY RING/U-box 271 337 - -
Amo06g1912 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 337 IPR013083 -
Amo06g1912 343 PANTHER TARGET OF ERK KINASE MPK-1 22 343 - -
Amo06g1912 343 Pfam Ring finger domain 291 333 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1912 Amo-Chr6 69488700 69492557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1912 13 340 C3H Transcription Factor Family AT1G68070 43.503 9.48e-91 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1912 - - ahf:112696795 663.299