Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1876 ATGGAGAATATTGGTGATGAGTACCATCGTTATTGGGAGACCAGCATGTTCCTCCAAACCCAAGAACTCGACAACCATGGCAGCTGGGGTTTGGATGAGGCGTTGTCAGGCTACTACGATTCGAGCTCGCCGGACGGTGCGGCTTCGTCGGCGGCGTCGAAGAATATTGTGTCGGAGAGGAATAGAAGGAAGAAGCTCAATGAAAGGCTTTTTGCTCTTCGATCAGTGGTCCCCAACATCAGCAAGATGGATAAGGCTTCAATAATAAAGGATGCAATTGAGTACATACAAAAGTTGCAAGAACAAGAGAGGATAATTCAATCAGAGATAGTTGAGCTTGAGAGTGGTATGATGGTGGAGAAGAAGAACCCTAACAGCTATGAATTTGAGCATCAGGAGCTTCCAGTGTTGTTGAGGTCCAAGAAGAAGAGAACAGATGAGCTTTATGATTCTCTCAATTCTAGAAACTCCCCTATTCATATACTAGAGCTGAGAGTAACATACATGGGAGAGAAGACAATAGTGGTAAGCTTGACATGCAGTAAAAGGACAGATACAATGGTGAAACTGTGTGAAATTTTTGAGTCATTGAAACTGAAGATCATCACCGCCAATATCACTTCCCTTTCCTCTGCCAGGCTTTTGAAGACAGTCTTCATTGAGGCAGATGAAGAAGAAAAAGATCTTTTGCAGATAAAGATCCAAACAGCAATTGCAGCTCTTAATGACCCTCTAAGTCCAATGAGCATTTGA 753 0.4316 MENIGDEYHRYWETSMFLQTQELDNHGSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQKLQEQERIIQSEIVELESGMMVEKKNPNSYEFEHQELPVLLRSKKKRTDELYDSLNSRNSPIHILELRVTYMGEKTIVVSLTCSKRTDTMVKLCEIFESLKLKIITANITSLSSARLLKTVFIEADEEEKDLLQIKIQTAIAALNDPLSPMSI* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1876 250 Gene3D - 47 115 IPR036638 GO:0046983
Amo06g1876 250 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 244 - -
Amo06g1876 250 Pfam Helix-loop-helix DNA-binding domain 57 100 IPR011598 GO:0046983
Amo06g1876 250 PANTHER TRANSCRIPTION FACTOR BHLH35 1 244 - -
Amo06g1876 250 SMART finulus 56 105 IPR011598 GO:0046983
Amo06g1876 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
Amo06g1876 250 Coils Coil 96 116 - -
Amo06g1876 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 117 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1876 Amo-Chr6 68298086 68308566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1876 1 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.375 1.06e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g1876 HLH 4.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1876 - - aip:107639158 420.624