Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1858 ATGTCAAGTGGAGCAACGCACTGGTGTTACGAATGCAGGCAGCCAATTGTGCTCGGAGGGAGGGATGTTGTTTGTCCCTACTGTGATGGAGGGTTCGTTCAAGAACTTAATGAATTGCAAGGATTTGCGCCTCAACATGCCTTTCCATCATCACAGATGGGGGAGTTCCATCAGATGCCTGATTTTTTCGATGCTTTGCATGCTTTTATGGGGCGGAGGGGTCCTGATCCAAGGTTTGGTTTTATAGATGCTGTGGATAATTTCATGAGGCAGAGAATGGCTGGAAGGCACCCCAATTTTGATGTTAGAGGGAGGTCTGGTCCTGCCCCGGGTCCTGAACAGAGTTGGGGTGTTGTTAGTTCTGGTCCTTATTTGATATTTCACGGTCAAGTTCCTGGATTCACCTTGGCTAATGGCGGCAGTCCAAGAGGTGGTCCGAGGGGTGTTGATTTCGGTGACTACTTTATGGGCCCTGGACTTGAAGAACTTATTGAGCAACTCACCATGAATGAACGGCGTGGTCCACCCCCAGCTGCACGTACTTCAATTGACGCAATGCCTACTATTAAGATCACGAGTGCGCATCTTCGCCAAGATTCACACTGTCCCGTGTGTAAAGAGAAATTTGAACTGGGATCTGAAGCCAGAGAGATGCCATGTAACCATATTTACCACTCTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAACTTCCACCTCAAGGACATGCTAGTTCTCGTGGTAGTCGAAGTGGGGGTGGAAGGAACGCCAACAGTAGTGGTGACAGCGAGAGCAGCTCCAGGAGCAGGGAGAGCAGCCATCAGAGCCAAGGAAGGAGAAATCCTCTATCATTTCTGTGGCCGTTCCGTTCTTCCAGTTAA 906 0.4923 MSSGATHWCYECRQPIVLGGRDVVCPYCDGGFVQELNELQGFAPQHAFPSSQMGEFHQMPDFFDALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPAPGPEQSWGVVSSGPYLIFHGQVPGFTLANGGSPRGGPRGVDFGDYFMGPGLEELIEQLTMNERRGPPPAARTSIDAMPTIKITSAHLRQDSHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGSRSGGGRNANSSGDSESSSRSRESSHQSQGRRNPLSFLWPFRSSS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1858 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 249 IPR013083 -
Amo06g1858 301 Pfam Ring finger domain 201 243 IPR001841 -
Amo06g1858 301 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Amo06g1858 301 PANTHER OS03G0351800 PROTEIN 1 301 - -
Amo06g1858 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 301 - -
Amo06g1858 301 SUPERFAMILY RING/U-box 182 249 - -
Amo06g1858 301 SMART ring_2 202 242 IPR001841 -
Amo06g1858 301 MobiDBLite consensus disorder prediction 284 301 - -
Amo06g1858 301 CDD RING-H2_RNF126_like 202 243 - -
Amo06g1858 301 MobiDBLite consensus disorder prediction 249 301 - -
Amo06g1858 301 MobiDBLite consensus disorder prediction 252 274 - -
Amo06g1858 301 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1858 Amo-Chr6 67579815 67581933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1858 145 259 C3H Transcription Factor Family AT5G01980 41.880 2.80e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1858 K11982 - gmx:100813674 501.901