Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1857 ATGGCTGTTACCTTCTCAGATCTGCACACAGAGTCTGGTCTCAAAACCCTAGAGGAGTTCCTCTCTGGGAAGACCTATGTTTCTGGGGATCAATTGACAAAAGATGATATCAAAGTGTATGGTTTTGTTTCGGAGAAGCCAGGTAGCTCTTTTCCCAGTGCTGCCAAGTGGTACGATATTGTCTCTTCCCATCTTGCCGCAAGTTTTCCTGGCAAAGCTCAAGGTGTGAAATTTGCTGGCCAAGGTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCGGCGGCTGCTGCTGCTGATGACGACGATCTTGATCTCTTCGGTGATGAGACAGAGGAGGATAAGAAGGCAGCTGAGGAAAGGGAGGCTGCAAAGAAGACCGCGAAGAAGAAAGAAAGTGGAAAGTCATCCGTTTTGCTTGATGTTAAGCCTTGGGATGACGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGTAGCATTCAGATGGAGGGTCTACTCTGGGGAGCATCCAAACTGGTTCCCGTTGGATACGGCATCAAGAAGCTACAGATCATGATGACTATTGTTGATGACCTTGTGTCTGTCGACTCCCTCATCGAGGAGCATCTCACTGTCGAGCCATGCAACGAGTATATCCAGAGCTGCGACATTGTTGCATTCAACAAAATTTAA 672 0.4851 MAVTFSDLHTESGLKTLEEFLSGKTYVSGDQLTKDDIKVYGFVSEKPGSSFPSAAKWYDIVSSHLAASFPGKAQGVKFAGQGAPAEAAPAKAAAAAAADDDDLDLFGDETEEDKKAAEEREAAKKTAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIQMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEHLTVEPCNEYIQSCDIVAFNKI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1857 223 CDD EF1B 132 223 IPR014038 GO:0003746|GO:0006414
Amo06g1857 223 SUPERFAMILY GST C-terminal domain-like 10 64 IPR036282 -
Amo06g1857 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Amo06g1857 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Amo06g1857 223 PANTHER ELONGATION FACTOR 1-BETA 2 1 223 - -
Amo06g1857 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 223 - -
Amo06g1857 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
Amo06g1857 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Amo06g1857 223 Gene3D - 127 223 IPR014717 -
Amo06g1857 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1857 Amo-Chr6 67573414 67575085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1857 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 75.877 4.81e-109 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1857 K03232 - gmx:100500082 316.235