Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1854 ATGTCAAACAACGTCTCTTCTTCTTCCCCAGCAAACCAGCCTGATAAGAAGGGTAAAGAGAAAGTTAATTTTGATGAAATGAACAAGGACAAGCAGATTCTAGTCAACGAACCAAACGTTCCAAACAACATGAACAACAAGCGCAAAGCAATCATGTTAGGAGATGATCATGATCATCCTAATACCGATGGTTCTGCTGCTGTTACCGAAGATGGAAGTGATTCCACTAAAGAACAGGAGCCCAACTCTGACAAAACTCTCATTATTGGTAGCCAGAATTCACAAAAGAAGAAAATTTCATACAATTGCACCTTTTGTGACAAGAGCTTTTCTTCCGCACAAGCTCTTGGGGGTCACCAAAATGGTCACAGAATGGAGAGAATGCAACAGTCCCATAACAAAAATAGCAGTGGAAATGATGGGATCCAACTCTTAAATAACATGACCATGGGTGCGGGTATGAACTCATCATCGTCAACAAGCTCCATGGAGCTACCGTCTTCGCCAACCATCCCTTCTTTTAGGCCCTTCTTTAATGGGGAACCTAATATGATGATCATGGGATACAATAATAATATTATTAATAATGATTATCATCCTTATCATCATGGTTTATTCCAGAACAATGGAGGGAGACCATCAAACTTTTTCAGTCCTGGCCCTGTGGTTGGTGCAAATAACAATTTTGCATACCCTCGTGTTGGTTCTGCTTTTGATGCAGTGGGAGTTGGAAACGTTGGTGCATTTCAGCATCCATATGAATTTCAAACAAGAGTAGGCCTCAATGATGCTGCATCAGTGAACCCTGGACCTGGTGGTACATCTCAGCATCCTCGTCCTGCTATGGCTGCTGTTGAGATTAGCAGAACTAGAATTGGGAATAACAACAACAATAATAACGGTGGTGTCGAAAGGCAGATTGTGAATGAGGCCTGTGAGACCCCACAGGGTGAATTTGAGTTTGTTTTGCTTCCATGTGCAGCAAGAAACAACGAGAATAATATGGTGGAGATTGACTTTGGTCTGGTTCCAAAGAAAGACGAAAATGGAGAAGCAAAAGAAAAAGCCGCGTCAGAGACTGATTGA 1086 0.4199 MSNNVSSSSPANQPDKKGKEKVNFDEMNKDKQILVNEPNVPNNMNNKRKAIMLGDDHDHPNTDGSAAVTEDGSDSTKEQEPNSDKTLIIGSQNSQKKKISYNCTFCDKSFSSAQALGGHQNGHRMERMQQSHNKNSSGNDGIQLLNNMTMGAGMNSSSSTSSMELPSSPTIPSFRPFFNGEPNMMIMGYNNNIINNDYHPYHHGLFQNNGGRPSNFFSPGPVVGANNNFAYPRVGSAFDAVGVGNVGAFQHPYEFQTRVGLNDAASVNPGPGGTSQHPRPAMAAVEISRTRIGNNNNNNNGGVERQIVNEACETPQGEFEFVLLPCAARNNENNMVEIDFGLVPKKDENGEAKEKAASETD* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1854 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Amo06g1854 361 PANTHER ZINC FINGER PROTEIN JAGGED 83 247 IPR045320 GO:0003700
Amo06g1854 361 SUPERFAMILY beta-beta-alpha zinc fingers 99 128 IPR036236 -
Amo06g1854 361 MobiDBLite consensus disorder prediction 14 32 - -
Amo06g1854 361 Pfam C2H2-type zinc finger 101 124 - -
Amo06g1854 361 PANTHER ZINC FINGER PROTEIN 2 83 247 - -
Amo06g1854 361 MobiDBLite consensus disorder prediction 1 86 - -
Amo06g1854 361 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Amo06g1854 361 MobiDBLite consensus disorder prediction 50 64 - -
Amo06g1854 361 Gene3D Classic Zinc Finger 76 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1854 Amo-Chr6 67381901 67383196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1854 101 199 C2H2 Transcription Factor Family AT5G27880 29.000 1.06e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g1854 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1854 - - adu:107494137 686.411