Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1841 ATGGCAGTGTCTCCTCCTCTTCCAAGCCAGTCTTTGGAAGCTGAATTTGAAGCTCAGAACTCTGAATCTCCACTCTTGCAAATTGGAAATGATGGCCTCACTAAACGTGTTATTAGGAAAGGTCTCACTTGGCAAACTCCATTCTTTGGAGACGAGGTTGAAGTTAATTTCAGAGGACAAGTTGAAAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCCACGTTTCGTGAAGTTATCAAGGGCTGGGATGAGGGAGTTGGGAGCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATGCCACCTAACTTGGCGTATGGGGAAGTAGGGTCTCCACCACTGGTTCCTCCCAACGCGACTCTCATTTTCGAAATCGAATTGCTATCTTGGAATACCATTAAAGACTTGAATGGTGATGGAGGAATCATCAAAAAGATTCTAAAAGAGGGAGATGGATGGGCTACCCCTAAAGACGCTGATGAAGTTCTAGTGAAATATGAAGCAATGCTAGAGAGTGGCATGCTTGTCTCTAACTCTGACCAAGGTGTGGAATTTAATGTAAGTGAAGGCTATCTATGTCCTGCCATGAGTGTAGCAGTTAAGACCATGAGAAAGGATGGAATCCTTCAAAATTCAGATAGAATCAAGGAGCCTGATGGTTTTCTCCGACCGGATTTCAAGATAACAACAATCAAACTAGAGTTAGTATCCTGGAAAATTGTGACCGATGTCACAGGCAATAAGAAAATATTGAAGAAAATTAAGAAATCTGGTGAGGGGTTCGATCGTCCCAACGAAGGATCTCATTTATATATTCATGTAAACAAAAAGATGGAACAATTATTCAGAAGAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAATTCAAGAAGGAGAAACCATTTTGGAAGATGGACAACCAAGAGAAATTAGAAGCTTGTGAGAAGAAGAAGCATGATGGGAATTTGATGTTTAAGGCTGAAAATTTCAAGCAGTTTGATCATTCATTCAGTGAAGATGAGAAGAGTCATGCAAATACGTTACGGTTATCATGTAACTTGAATAATGCTGCTTGTAAACTCAAATTGGGGGACTACACTGAAGCTTCCAGATTATGCACAAAGGTACTAGAGAAAGATCCTTTAAATGTGAAGGCTCTATACAGAAGATGCCAAGCATACCTAAAAACATCAGATTTGGAGAAAGCTGAGGTTGATATTAAAAGAGCACTCATTATTGATCCAAATAACAGAGACATTAAAGTTGAGTACAAAGAGCTGAAACTCAAGCAGAAGGAATACAACAAATATGAATCCAACATCTTCGGCACAATGTTTTCAAGGATGAGCTAG 1356 0.3982 MAVSPPLPSQSLEAEFEAQNSESPLLQIGNDGLTKRVIRKGLTWQTPFFGDEVEVNFRGQVENGASLESSYDKGSTFREVIKGWDEGVGSMKKGERAIFKMPPNLAYGEVGSPPLVPPNATLIFEIELLSWNTIKDLNGDGGIIKKILKEGDGWATPKDADEVLVKYEAMLESGMLVSNSDQGVEFNVSEGYLCPAMSVAVKTMRKDGILQNSDRIKEPDGFLRPDFKITTIKLELVSWKIVTDVTGNKKILKKIKKSGEGFDRPNEGSHLYIHVNKKMEQLFRRKDQRKNLLSSQFKKEKPFWKMDNQEKLEACEKKKHDGNLMFKAENFKQFDHSFSEDEKSHANTLRLSCNLNNAACKLKLGDYTEASRLCTKVLEKDPLNVKALYRRCQAYLKTSDLEKAEVDIKRALIIDPNNRDIKVEYKELKLKQKEYNKYESNIFGTMFSRMS* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1841 451 PANTHER PEPTIDYLPROLYL ISOMERASE 289 451 - -
Amo06g1841 451 SMART tpr_5 351 384 IPR019734 GO:0005515
Amo06g1841 451 SMART tpr_5 385 418 IPR019734 GO:0005515
Amo06g1841 451 ProSiteProfiles TPR repeat profile. 385 418 IPR019734 GO:0005515
Amo06g1841 451 SUPERFAMILY FKBP-like 24 133 - -
Amo06g1841 451 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 50 129 IPR001179 GO:0003755
Amo06g1841 451 Gene3D - 8 135 IPR046357 GO:0003755
Amo06g1841 451 Gene3D - 136 211 IPR046357 GO:0003755
Amo06g1841 451 Gene3D Tetratricopeptide repeat domain 301 444 IPR011990 GO:0005515
Amo06g1841 451 Pfam Tetratricopeptide repeat 362 417 - -
Amo06g1841 451 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 289 451 - -
Amo06g1841 451 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 232 276 - -
Amo06g1841 451 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 209 - -
Amo06g1841 451 SUPERFAMILY FKBP-like 137 209 - -
Amo06g1841 451 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 132 IPR001179 GO:0003755
Amo06g1841 451 SUPERFAMILY TPR-like 312 447 IPR011990 GO:0005515
Amo06g1841 451 PANTHER PEPTIDYLPROLYL ISOMERASE 232 276 - -
Amo06g1841 451 PANTHER PEPTIDYLPROLYL ISOMERASE 9 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1841 Amo-Chr6 66930677 66948778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1841 4 450 Calmodulin-binding Proteins AT5G48570 34.454 2.88e-75 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1841 - - adu:107494131 525.398