Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1822 ATGTCCGCCGCCGCCGGAGCTTCTAAACTCCATGAGTCGCCGCCGACGGAAGCTTCCGGCATCCCGAACCGGCCGCCGCCGAAGCGTCACCTCGCCTTCGCTTCGACCAAGCCGCCGTTTGCTCCGCTGGACGACTACCGCAGCTTCTCCGGTCCCCACTGTCGGAAAGCCTCCGATCAAGAACAGGAAGCCGTCGTTGTTCGTTCTCCATACATGAAGCGCAAGAGTGGAGGAGTGAATGACCGTCTCAGAGAGACACAGGAGCAAAGTAATAGTCCTGGATATGCTAATACAGTTAATAGTCCTCTCCAAACCCCTGGATCTACAAAAGGAGGGAGAACATATAATAAGTCAAGGGCTTCTAAGGAAGGTAGATCCGTTCCACAAACACCCATCTTAGAGGCTGGATCCCCATCTCTTACTCCTAGCAGCTGCCGCTACGACAGTTCCTTAGGTCTCTTGACAAAAAAATTTGTCAATTTGCTCAAGCATGCAGAGGGTGGCAATCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGAAGGATATATGACATAACTAACGTGCTGGAAGGAATTGGTCTTATAGAGAAGAAGATCAAGAACAGAATACATTGGAAGGGGATTGATTGTTCTACATCTGGTGGGATAGATGATGATGTCTCTATGCTGAAGGAAGATGTTGAGAAACTTTCCTTGGAGGAGCACCYATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGATTTTAAGTGAAGATGAAAACAATAAGAAGATGCTTTTCGTGACTGAAGATGATATCAAGTCCTTACCTGAATTCCAGAATGAAACTCTCATAGCAATTAAAGCTCCACATGGAACCACARTGGAAGTCCCTGAACCTGAGGAAGCTGTTGACTACCCACAGAGGAGATATAGGGTCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTTCCTTATCAGTCAATTTGAGGAGAAATTCGAAGAGATGAGCTTTCCACTTGCTTCAAGTTCAGGGTCCAACGAACATCAAGCAGCAGAACTGCTTCCTGTTGAATGCAATGATAAAGCCCCTGAACCTCCAGCTCAACTCTCATCTAATACCTGCTCTGATCTGAACACTGTACAAGAATTTGCTGGSGGCATGATGAAAATTGTTCCTTCAGCCGCTGATACCGATGCAGATTACTGGCTTCTATCAGATGTTGAAGCTAGCATAACAGACATGTGGAAAACAGATTCTAGTGTAGATTGGGATGGTGTGGACATGCTTAATTCTGACTTTGTACTCATCTCGAGGCCACAGACTCCATCATCTGGGTTTGCTGAAGCACCATCAGCAGTAGCCAGCATCCCGCATAGGTGA 1383 0.4635 MSAAAGASKLHESPPTEASGIPNRPPPKRHLAFASTKPPFAPLDDYRSFSGPHCRKASDQEQEAVVVRSPYMKRKSGGVNDRLRETQEQSNSPGYANTVNSPLQTPGSTKGGRTYNKSRASKEGRSVPQTPILEAGSPSLTPSSCRYDSSLGLLTKKFVNLLKHAEGGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKIKNRIHWKGIDCSTSGGIDDDVSMLKEDVEKLSLEEHXLDDQIREMQERLRILSEDENNKKMLFVTEDDIKSLPEFQNETLIAIKAPHGTTXEVPEPEEAVDYPQRRYRVILRSTMGPIDVFLISQFEEKFEEMSFPLASSSGSNEHQAAELLPVECNDKAPEPPAQLSSNTCSDLNTVQEFAGGMMKIVPSAADTDADYWLLSDVEASITDMWKTDSSVDWDGVDMLNSDFVLISRPQTPSSGFAEAPSAVASIPHR* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1822 460 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Amo06g1822 460 PANTHER TRANSCRIPTION FACTOR E2FB 25 443 - -
Amo06g1822 460 SUPERFAMILY "Winged helix" DNA-binding domain 146 209 IPR036390 -
Amo06g1822 460 Coils Coil 241 258 - -
Amo06g1822 460 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Amo06g1822 460 PANTHER TRANSCRIPTION FACTOR E2F 25 443 IPR015633 GO:0000978|GO:0006357
Amo06g1822 460 Coils Coil 231 239 - -
Amo06g1822 460 MobiDBLite consensus disorder prediction 1 141 - -
Amo06g1822 460 Gene3D - 218 328 - -
Amo06g1822 460 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Amo06g1822 460 Gene3D - 141 213 IPR036388 -
Amo06g1822 460 MobiDBLite consensus disorder prediction 83 125 - -
Amo06g1822 460 CDD E2F_DD 222 328 IPR032198 GO:0046983
Amo06g1822 460 SUPERFAMILY E2F-DP heterodimerization region 223 328 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1822 Amo-Chr6 64805057 64810296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1822 22 458 E2F-DP Transcription Factor Family AT2G36010 55.957 5.08e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo06g1822 E2F_CC-MB 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1822 K06620 - gmx:100811762 617.846