Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1780 ATGTGCTTCAGCACATTAGAAGATGCGCGTGCATATTATTACCAATATGCGGCTAGGACTGGTTTTGTCATCAAAATAAGAACAACCGGCTGGGAGACTAGAAATGGTCAGAGGATGGTTGTTAATCAGGCTTTGCATTGTAACAGAGATGGATACCACACATCCCGTGTAAAGGCACCCAAGAGAAGGAAAACGGTGGCCTCAACAAACTGCAAATGGAAGATTTCTCGAGTAGAGGTATCCCACTCACACTCGCTTAATCTAAAGCTATCTGGAATGTTTTCAACAAACCGTCAGCTAAGTATGCATGTGAAGGACCTGATACAGCAAAACGACCAAGCTGGCATTAGACCGAGTAAGACGTACCAGGCACTAGCCAATGCCGCCGATATGTTTGCTGACCGACACATGTGGGTGCCAGTATTTTTCAAGGATGAATTTTGGGCTGGCATGAGGAGCACACAACGTAGTGAGAGCATGCATTCAGTTTTTAATAAGTACTTAAACAGTAAGATCTCTTTGTTGCAATTTGTTTGCCAATACCAAAACTGTGTTATAGACAAGGAGCAAAAGGAGCTTGAGTGTGACGCTGCTGATTTAAGGGGGATTATCCCTTGTGTTTCTAGCTCACCAATAGAAAAGCAGTTCCAGAGAGAATATACAAACTCGATGTTTCGAGACGTTCAGGATCAATTTATAAAAAAGGCCGATTGTGACATCTCCTCAATCAACCATCATGGCACAAGTATAGTTTGTGAAGTTGACCAACAAAAGATGGTGTTTGACATGTTAGTGTATAGCAGATACCAAGTCGTGTATTGCTCGCAGTCATCAGAAGTTCAATGTGATTGCTTTATGTTCCAATCGAATGGTATTTTATGCTGCCACAGTCTTGCTGTTCTTCTATATTTTCGTGTAACAGCAGTGTCCTCACAATACATTCTATCCCGATGGAGTAAGAATGTTAGTCGGAGACACACATACATCACCATGACCATTTTTAGGGAATTGTGTTCTGATTTTTACAACGTCGCTCTAGGATTTTGTGGCTACTCCAAGATCTATCCTTTTTTCACGTCATTTGTTTATTTTAAGTGTGTTGAAAGGATGATAAGTTATGATGTTATTTTTTAA 1134 0.4083 MCFSTLEDARAYYYQYAARTGFVIKIRTTGWETRNGQRMVVNQALHCNRDGYHTSRVKAPKRRKTVASTNCKWKISRVEVSHSHSLNLKLSGMFSTNRQLSMHVKDLIQQNDQAGIRPSKTYQALANAADMFADRHMWVPVFFKDEFWAGMRSTQRSESMHSVFNKYLNSKISLLQFVCQYQNCVIDKEQKELECDAADLRGIIPCVSSSPIEKQFQREYTNSMFRDVQDQFIKKADCDISSINHHGTSIVCEVDQQKMVFDMLVYSRYQVVYCSQSSEVQCDCFMFQSNGILCCHSLAVLLYFRVTAVSSQYILSRWSKNVSRRHTYITMTIFRELCSDFYNVALGFCGYSKIYPFFTSFVYFKCVERMISYDVIF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1780 377 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 130 332 IPR031052 GO:0006355
Amo06g1780 377 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 109 IPR031052 GO:0006355
Amo06g1780 377 PANTHER OS03G0843700 PROTEIN 130 332 - -
Amo06g1780 377 PANTHER OS03G0843700 PROTEIN 1 109 - -
Amo06g1780 377 ProSiteProfiles Zinc finger SWIM-type profile. 269 305 IPR007527 GO:0008270
Amo06g1780 377 SMART 26again6 280 307 IPR006564 GO:0008270
Amo06g1780 377 Pfam SWIM zinc finger 276 303 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1780 Amo-Chr6 61367901 61370266 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g1780 SWIM 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1780 - - adu:107493576 419.468