Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1722 ATGCATAATATGCCTGGGACAAAGCAGAGTGATGAAACGGCCCAAAATCAAGAATCACCAGAGGGGCACAGTGAGCATGAAAAACCTACAGATTCTGATGAGCAGGTAGACCTTGAAGGGGATAATGATCAAGAGGAGACCATGGAGGAAGAGGTTGAATATGAAGAAGTAGAGGAAGAAGTCGAAGAGGAAGAAGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAAGAGACTAAACCCTCAGATGGTGAAGAGGATATAGGAGTGGTAGACAATAAGGATGAAGATGAGAAAAAGAAACATGCAGAAGTTCTTGCACTTCCACCTCATGGGTCAGAGGTTTACATTGGTGGCATTCCTCACAAAGTTTCAGAAGAAGATTTGAGGGCCTTCTGTGAATCTGTGGGAGAAGTGTCAGAGGTTAGGATTATGAAAGGAAAAGATTCAGGTGAAGCAAAAGGTTATGCATTTGTGACCTTCAAGTCAAAGGAATTGGCATCTATGGCTATTGAGAAACTGAACAACACTGAATTTAAGGGAAGAAAAATAAGGTGCTCAACATCCCAAGCTAAGCATAAGTTGTTCATTGGTAATGTTCCTAGAAATTGGACTTTAGAAAATATGAAGAAGGTAGTCTCAGAAATTGGGCCTGGAGTTGTTGCTGTGGAGCTGTTGAAGGACCCACAGATTTCTGGCCGTAATAGGGGGTTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACCCAAAATTCAAACTAGACGACAATGCTCCAACTGTGAGTTGGGCTGACCCAAGGAATTCTGAATCATCTGCTGCGACTCAGGTAAAAGCAGTTTATGTAAAGAACCTTCCAGAGAATATTACTCAGGATCGTCTTAAGGCACTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTGTCCCTCCTGCTAAAGCAGGACAAGAAAAGAGCAGGTTTGGGTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAAGCATTGAAGAATACTGAGAAGTATGAAATAGACGGGCAATCTCTGGAGTGTTCACTTGCAAAGCCACAAGCAGATCAGAAGTCATCCAGTACACTAAATTCACAGAAGTCTGTTGTACTTCCCACTTATCCACCTCAACTTGGTTATGGCATGGTTGGAGGTGCATATTCTGGTATTGGCACAGGATTTGGTCCTGCTGGGTTCACACAACCACTGATGTATGGTGCAGGAGCAACCGCAGCTGGCATGGCAATGATGCCAATGCTGTTACCAGATGGAAGGATTGGATATGTATTGCAACAGCCAGGGTTGCAACCACATACTCCTCCTCCGCCAGTATCCAGACATGGCAAGAGCAGTGGTGGTAGCTCAAGTAGTGGGAAACGTGGAAATGATAATAGCCATAACCGTGGCCGTGGCCGTGGCCGGTATCATCCCTACTAA 1470 0.4408 MHNMPGTKQSDETAQNQESPEGHSEHEKPTDSDEQVDLEGDNDQEETMEEEVEYEEVEEEVEEEEEEEEEEEEEEEETKPSDGEEDIGVVDNKDEDEKKKHAEVLALPPHGSEVYIGGIPHKVSEEDLRAFCESVGEVSEVRIMKGKDSGEAKGYAFVTFKSKELASMAIEKLNNTEFKGRKIRCSTSQAKHKLFIGNVPRNWTLENMKKVVSEIGPGVVAVELLKDPQISGRNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNSESSAATQVKAVYVKNLPENITQDRLKALFEHHGKITKVVVPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQSLECSLAKPQADQKSSSTLNSQKSVVLPTYPPQLGYGMVGGAYSGIGTGFGPAGFTQPLMYGAGATAAGMAMMPMLLPDGRIGYVLQQPGLQPHTPPPPVSRHGKSSGGSSSSGKRGNDNSHNRGRGRGRYHPY* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1722 489 MobiDBLite consensus disorder prediction 459 473 - -
Amo06g1722 489 PANTHER - 16 487 - -
Amo06g1722 489 SUPERFAMILY RNA-binding domain, RBD 283 368 IPR035979 GO:0003676
Amo06g1722 489 CDD RRM_SF 114 186 - -
Amo06g1722 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 274 IPR000504 GO:0003723
Amo06g1722 489 Gene3D - 274 381 IPR012677 -
Amo06g1722 489 MobiDBLite consensus disorder prediction 18 35 - -
Amo06g1722 489 MobiDBLite consensus disorder prediction 441 489 - -
Amo06g1722 489 MobiDBLite consensus disorder prediction 36 82 - -
Amo06g1722 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Amo06g1722 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
Amo06g1722 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Amo06g1722 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 357 IPR000504 GO:0003723
Amo06g1722 489 Coils Coil 44 79 - -
Amo06g1722 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 364 IPR000504 GO:0003723
Amo06g1722 489 SMART rrm1_1 113 186 IPR000504 GO:0003723
Amo06g1722 489 SMART rrm1_1 193 270 IPR000504 GO:0003723
Amo06g1722 489 SMART rrm1_1 287 360 IPR000504 GO:0003723
Amo06g1722 489 MobiDBLite consensus disorder prediction 1 100 - -
Amo06g1722 489 Gene3D - 34 192 IPR012677 -
Amo06g1722 489 SMART rrm2_1 113 186 IPR003954 GO:0003676
Amo06g1722 489 SUPERFAMILY RNA-binding domain, RBD 109 276 IPR035979 GO:0003676
Amo06g1722 489 MobiDBLite consensus disorder prediction 1 17 - -
Amo06g1722 489 MobiDBLite consensus disorder prediction 83 100 - -
Amo06g1722 489 Gene3D - 193 273 IPR012677 -
Amo06g1722 489 PANTHER GEO13361P1-RELATED 16 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1722 Amo-Chr6 59586158 59591282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1722 114 454 Eukaryotic Initiation Factors Gene Family AT4G34110 25.789 3.16e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1722 K13161 - gmx:100798476 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2415 16 102187611 102192754 Amo06g1722 06 59586158 59591282 hybridization