Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1714 ATGACTTTAAATCTTTGTGTACTGACCCCCAATCGAATTGTTTGGGATTCAGAAGTGAAGGAAATTATTTTGTCCACTAATAGTGGACAAATTGGAGTATTACCAAATCATGCACCTATTGCTACAGCTGTAGATATAGGTATCTTGAGAATACGCCTTAATGACCAATGGGTAACAATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATAAGATCACCATTTTAGTAAATGATGCCGAGAAGAGTAGTGACGTTGATCCAGAAGAAGCTAAACAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCTGAAGGCAAGAGACAACTAACCGAGGCAAATCTATCTCTCCGACGAGCTAGGACACGAATTTTCCACATTCATAGGAGTACATTTATGTTTTTGCTTTACGACTATGATATTTTTTGGGCATTTCTAATAATATCCAGTCTTATTCCTATTTTGGCATTTCTAATTTCTGGAATTTTAGCCCCGATTAGCAAAGGGCCCGAAAAACTTTCTAGTTATGAATCAGGAATGGAACCAATGGGTGATGCTTGGTTACAATTTCGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAGACGGTTTTTCTTTATCCCTGGGCAATAGGTTTTGATATATTGGGGATATCCGTATTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTTGGTTCAGTTTATGCATGGCGAAAAGGGGCATTAGAATGGTCTTAA 765 0.3686 MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWVTMALMGGFARIGNNKITILVNDAEKSSDVDPEEAKQTLEIAEANLSKAEGKRQLTEANLSLRRARTRIFHIHRSTFMFLLYDYDIFWAFLIISSLIPILAFLISGILAPISKGPEKLSSYESGMEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAIGFDILGISVFIEALIFVLILIVGSVYAWRKGALEWS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1714 254 Hamap NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 137 254 IPR023043 GO:0016651
Amo06g1714 254 Gene3D NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 128 254 IPR038430 -
Amo06g1714 254 CDD F1-ATPase_delta 3 123 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo06g1714 254 Hamap ATP synthase epsilon chain [atpC]. 1 128 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo06g1714 254 Coils Coil 96 116 - -
Amo06g1714 254 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 1 127 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo06g1714 254 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 2 126 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo06g1714 254 Gene3D - 1 87 IPR036771 -
Amo06g1714 254 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 1 82 IPR036771 -
Amo06g1714 254 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 3 81 IPR020546 GO:0015986
Amo06g1714 254 Pfam NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 157 253 IPR000440 GO:0008137
Amo06g1714 254 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 86 126 IPR020547 -
Amo06g1714 254 Gene3D - 89 127 - -
Amo06g1714 254 PANTHER ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTIC 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1714 Amo-Chr6 59326956 59329264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1714 18 126 Primary Pumps ATPases AT5G47030 27.273 5.63e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1714 K05574 K02114 csin:14412426 233.802