Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1693 ATGGAGAGGTTGGAACTAAAGGAAGTTCAGAGACTTGAAGGCCACACTGATAGGGTTTGGAGCTTGGCTTGGAACCCCGCCACCGGCCACAACGGTGTCCCACTCCTCTTTGCCTCTTGCAGTGGCGACAAAACTATTCGAATCTGGGAACAGAACCTCTCTTCTGGTGCGGTTTTGGATGAGCCGCACACTCGAACCGTTCGGTCGTGTGCTTGGTCACCTTCTGGTAAGCTGCTGGCCACTGCAAGTTTTGATGCCTCTACAGCTATATGGGAGAATGTTGGGGGTGATTACGAGTGTGTCTCCACTTTGGAGGGACATGAACACGAAGTGAAGAGTGTGTCTTGGAATGCATCTGGAAACCTACTTGCAACGTGTAGTAGAGATAAATCTGTTTGGATATGGGAAGTGCTGCCAGGGAATGAATTTGAGTGTGTGTCAGTGTTGCAAGGACATACCCAAGATGTGAAAATGGTGAAATGGCATCCAACAATGGATATCTTATTTTCGTGTAGTTATGATAACACTATTAAGGTTTGGGCAGATGAAGGTGATAGTGACGATTGGCAATGCATTCAAACAATAGGAGAACCGAATAATGGTCATACTTCAACTGTTTGGGCACTCTCTTTCAATGTCAGTGGTGATAAAATGGTTACTTGCAGTGATGATCTTACGCTTAAGATATGGGAATCAGAAAATATAGGGATGCAATCTGGTGATGGATTCAGACATTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCTTTGCTAGTGGAGCTGCCGATGATGCTATACGTCTTTTTGTGGATGACAATGAAAGTCAAGTGGATGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAAAAGGCCCATGATATGGACATAAATTCAGTGCAATGGAGCCCTGGGGAGAAGCCGCTATTAGCCTCTGCGAGTGATGATGGGACAATCAAGGTGTGGGAGGTAGTGTCACAGAGGTGA 1026 0.4571 MERLELKEVQRLEGHTDRVWSLAWNPATGHNGVPLLFASCSGDKTIRIWEQNLSSGAVLDEPHTRTVRSCAWSPSGKLLATASFDASTAIWENVGGDYECVSTLEGHEHEVKSVSWNASGNLLATCSRDKSVWIWEVLPGNEFECVSVLQGHTQDVKMVKWHPTMDILFSCSYDNTIKVWADEGDSDDWQCIQTIGEPNNGHTSTVWALSFNVSGDKMVTCSDDLTLKIWESENIGMQSGDGFRHWRHLCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQVDGPLYKLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWEVVSQR* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1693 341 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 339 IPR028608 GO:0016226|GO:0097361
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Amo06g1693 341 ProSitePatterns Trp-Asp (WD) repeats signature. 323 337 IPR019775 -
Amo06g1693 341 PANTHER WD40 PROTEIN CIAO1 4 338 IPR028608 GO:0016226|GO:0097361
Amo06g1693 341 CDD WD40 8 336 - -
Amo06g1693 341 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 137 IPR001680 GO:0005515
Amo06g1693 341 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 4 338 - -
Amo06g1693 341 SMART WD40_4 296 336 IPR001680 GO:0005515
Amo06g1693 341 SMART WD40_4 245 284 IPR001680 GO:0005515
Amo06g1693 341 SMART WD40_4 5 50 IPR001680 GO:0005515
Amo06g1693 341 SMART WD40_4 188 231 IPR001680 GO:0005515
Amo06g1693 341 SMART WD40_4 97 136 IPR001680 GO:0005515
Amo06g1693 341 SMART WD40_4 142 181 IPR001680 GO:0005515
Amo06g1693 341 SMART WD40_4 52 92 IPR001680 GO:0005515
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 92 IPR001680 GO:0005515
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 341 IPR001680 GO:0005515
Amo06g1693 341 SUPERFAMILY WD40 repeat-like 4 335 IPR036322 GO:0005515
Amo06g1693 341 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Amo06g1693 341 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Amo06g1693 341 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Amo06g1693 341 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Amo06g1693 341 Pfam WD domain, G-beta repeat 144 180 IPR001680 GO:0005515
Amo06g1693 341 Pfam WD domain, G-beta repeat 99 135 IPR001680 GO:0005515
Amo06g1693 341 Pfam WD domain, G-beta repeat 63 91 IPR001680 GO:0005515
Amo06g1693 341 Pfam WD domain, G-beta repeat 189 230 IPR001680 GO:0005515
Amo06g1693 341 Pfam WD domain, G-beta repeat 304 335 IPR001680 GO:0005515
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 180 IPR001680 GO:0005515
Amo06g1693 341 Gene3D - 35 341 IPR015943 GO:0005515
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 92 - -
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 149 180 - -
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 231 - -
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 137 - -
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 341 - -
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Amo06g1693 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 231 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1693 Amo-Chr6 58341793 58346197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1693 75 341 U-box Gene Family AT2G33340 26.592 8.58e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1693 K24730 - aip:107645668 664.07