Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1685 ATGGTGGTAGCAGAGGCGGAGATGAACAACAACTCCCAGGGAGAAGTGCAATCGCCGGTAATCCAAGTGGGAGAGCAGCAAGCCGGGAAGAACAACCACCACCCATTCTCCTCCCTCGGGAGACAATCATCCATATATTCTCTGACCTTAGATGAGTTCCAGCACACACTGTGTGAGAGTGGCAAGAACTTCGGATCCATGAACATGGACGAGTTTCTTAGTAGCATATGGAATGCAGAAGAGAACCAAGCCATAGTAAACTCTTCTAACAACATCACCAATAATAACACACCACTAGGTGAAGCTTCTTCTGCAATGATGAGGGAACAGCAGCAGAGTCTCCATCGGCAAGGATCACTCACTATTCCTGCGCCTTTAAGCCGGAAAACCGTGGAGGAGCCAACCTTTGGGGAGATGACTTTGGAGGATTTCTTGGTCAAAGCAGGGGACTATTATCGGTGTGTGGTGCTGTGGTTGCGGCTGCTTCGCCGTACCAGGCAGAGCCTTCTGGATACCCTGGGAGTAGTTGCAAGAGGGATGGTGGCGGCGGAGCATACCCTACACCGGGTTCCGCCGGCGGGGTTTAAGGTCGTCGAGCGACGGCAGCGGAGGATGATTAAGAACAGAGAATCTGCTGCTAGATCCAGAGCCAGAAAACAGGCGTACACAGTTGAATTAGAAGCAGAACTCAACCAACTGAGAGAAGAGAACGCCCAACTTAAACAGGCGCTGGCCGAGTTCGAGAAGAGAAGAAAGCAACAGTGTTGTGAGGAGGAAATGAACGTTAGAGTTCAAACCAAAGCTCAGAAGGCAACAGAGAAATTGAGAGCATTGAGAAGGAACCAAAGTTGTCCTTTGTGA 861 0.5029 MVVAEAEMNNNSQGEVQSPVIQVGEQQAGKNNHHPFSSLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLSSIWNAEENQAIVNSSNNITNNNTPLGEASSAMMREQQQSLHRQGSLTIPAPLSRKTVEEPTFGEMTLEDFLVKAGDYYRCVVLWLRLLRRTRQSLLDTLGVVARGMVAAEHTLHRVPPAGFKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENAQLKQALAEFEKRRKQQCCEEEMNVRVQTKAQKATEKLRALRRNQSCPL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1685 286 Coils Coil 216 257 - -
Amo06g1685 286 SMART brlzneu 196 262 IPR004827 GO:0003700|GO:0006355
Amo06g1685 286 CDD bZIP_plant_BZIP46 200 254 - -
Amo06g1685 286 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 250 IPR004827 GO:0003700|GO:0006355
Amo06g1685 286 Gene3D - 198 256 - -
Amo06g1685 286 MobiDBLite consensus disorder prediction 89 126 - -
Amo06g1685 286 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Amo06g1685 286 MobiDBLite consensus disorder prediction 89 124 - -
Amo06g1685 286 SUPERFAMILY Leucine zipper domain 200 249 IPR046347 GO:0003700|GO:0006355
Amo06g1685 286 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 6 133 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Amo06g1685 286 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 133 150 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Amo06g1685 286 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 196 285 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Amo06g1685 286 Coils Coil 261 281 - -
Amo06g1685 286 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 6 133 IPR043452 GO:0003700|GO:0045893
Amo06g1685 286 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 133 150 IPR043452 GO:0003700|GO:0045893
Amo06g1685 286 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 196 285 IPR043452 GO:0003700|GO:0045893
Amo06g1685 286 Pfam bZIP transcription factor 200 252 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1685 Amo-Chr6 58115829 58118308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1685 38 286 bZIP Transcription Factor Family AT3G56850 36.306 6.36e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo06g1685 bZIP_1 2.8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1685 K14432 - egr:104438070 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2388 16 101165856 101171387 Amo06g1685 06 58115829 58118308 hybridization