Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1639 ATGACGATATGTAGCGGCGATTACAATGGTACTGCAAAAAAAAAAAGAAAACAAAAAACAAAAGAACACTTTCGCCAATTCACTAGTCAGATCCCACTGCAACTCGCGACACATTGTTCTGGAACGAAGATGAAGGTTATCGCCGCCTATCTCCTCGCTGTTCTCGGCGGCAACACTTCCCCTTCCGCCGGCGACATCAAGGACATCCTCGGCTGCGTTGGAGCTGAAGCTGATGATGAAAGGATAACGCTTCTTTTGTCTGAAGTGAAAGGCAAAGACATAACAGAGGTCATTGCCGCCGGTAGGGAAAAGCTTGCTTCGGTGCCTGCCGGTGGTGGCGGTGCTGTGGCCGTTGCCGCTGCTCCTAGCGGAGGTGCTGCTGCTCCCTCAGCCTCCGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGTCACTGCTATTACTACTACAATTACTATTACTATTATTATTATTGTAATCTGATTGTTTTGTTTGTGTTACAGGATATGGGATTCAGTCTCTTTGACTAA 549 0.4663 MTICSGDYNGTAKKKRKQKTKEHFRQFTSQIPLQLATHCSGTKMKVIAAYLLAVLGGNTSPSAGDIKDILGCVGAEADDERITLLLSEVKGKDITEVIAAGREKLASVPAGGGGAVAVAAAPSGGAAAPSASESKKEEKVEEKEESDDVSHCYYYYNYYYYYYYCNLIVLFVLQDMGFSLFD* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1639 182 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 27 148 IPR044076 GO:0002182|GO:0003735|GO:0022625
Amo06g1639 182 Gene3D - 43 102 IPR038716 -
Amo06g1639 182 Pfam 60s Acidic ribosomal protein 60 148 - -
Amo06g1639 182 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 27 148 - -
Amo06g1639 182 MobiDBLite consensus disorder prediction 124 143 - -
Amo06g1639 182 CDD Ribosomal_P2 44 107 IPR044076 GO:0002182|GO:0003735|GO:0022625
Amo06g1639 182 Hamap 50S ribosomal protein L12 [rpl12]. 45 182 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1639 Amo-Chr6 55348722 55350660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1639 44 113 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 72.857 6.59e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1639 K02943 - tcc:18598192 119.398