Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1627 ATGGACTTCCATTATCTGAAGCAATGGAGAAACCAGGATGAGTCAGAGGAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCACCAGAATCCCATCAACAACAGCCACCATCACCTGCCTCTGCTCTCCCCTTGTTTGTACCTGAACCCAACAGCAAAGTCACCTGCACCCTGTCAGATTCAACACTTGCTCCTCATACTACTACTACTACCACCAAATTCCCCAGAATGGGGAGTTACTTCAGCTTGTCACAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCCGGTGCTGCTGTTCCCCCTGAGCTCCTTCAACCAATCAAGAAAAGCCTCTTCCATTCTTCTCCCTATTTCCTTCACCACTCTCTCCAACACTATCAACCTGCAGCTCTGTTGCAATCAGGGTACTGGGGAAGAGCATCAATGGATCCGGAGCCAGGGCGGTGCCGGAGGACTGACGGGAAGAAGTGGCGGTGCTCGAGGGACGTGGTGGCCGGTCAGAAGTACTGCGAGCGCCACATGCATAGAGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACCACTGGTGGTGGAACTACTTTAGGCGTTGTTTCATCATCTTCTTGTATCTCTTCACCGCCTCTTGCCACTGCCTCATTGAAATCCCCCTTTGATCTCCTTCACCTTAATAATGAACGGTCCTCTGGGAGTGGAGGGACCAAGGAAGAAGAAAACAAGAGGGTGTTTGAAAATCAAGATAACCATCATCATGTGGGTGGGGATGGTGGCAGATCAGGTGGGCACATGCTGAGGCATTTCTTTGATGACTGGCCACGTTCACTGCATCAGGACCCTGAAAACGCTGAAAACAATGGTGGTGGTGGTGGGAGTGGGAGGATGAACTCGGCCACATCACTCTCAATTTCAATGCCTGGAAATAATGCTGCTTCTTCGGATGTATCACTAAAGTTGTCCACTGGGTATGGGGAGGATCCGTGTCCAAGAAATGGGAATGGGAATGCAGAGGCAGAGCAACTGCAGTTGAGTTGGGCCGGAGGCTGGAGTTCGGGGAATCAAGTGGCTTCAATGGGAGGGCCACTTGCTGAGGCACTCAGATCATCCACTTCCACTTCATCTCCCACCAGTGTTCTGCATCACTTGCCTCGTGCTGCTGCCTCTCAGACCAGCTTCATTAGCACCTAG 1215 0.5103 MDFHYLKQWRNQDESEEQQHSTKMPKLLPPESHQQQPPSPASALPLFVPEPNSKVTCTLSDSTLAPHTTTTTTKFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLFHSSPYFLHHSLQHYQPAALLQSGYWGRASMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTTGGGTTLGVVSSSSCISSPPLATASLKSPFDLLHLNNERSSGSGGTKEEENKRVFENQDNHHHVGGDGGRSGGHMLRHFFDDWPRSLHQDPENAENNGGGGGSGRMNSATSLSISMPGNNAASSDVSLKLSTGYGEDPCPRNGNGNAEAEQLQLSWAGGWSSGNQVASMGGPLAEALRSSTSTSSPTSVLHHLPRAAASQTSFIST* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1627 404 Pfam WRC 151 193 IPR014977 -
Amo06g1627 404 ProSiteProfiles QLQ domain profile. 81 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo06g1627 404 SMART QLQ_2 80 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo06g1627 404 MobiDBLite consensus disorder prediction 1 47 - -
Amo06g1627 404 Pfam QLQ 82 114 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo06g1627 404 MobiDBLite consensus disorder prediction 298 322 - -
Amo06g1627 404 MobiDBLite consensus disorder prediction 1 21 - -
Amo06g1627 404 MobiDBLite consensus disorder prediction 282 322 - -
Amo06g1627 404 ProSiteProfiles WRC domain profile. 150 194 IPR014977 -
Amo06g1627 404 MobiDBLite consensus disorder prediction 184 210 - -
Amo06g1627 404 PANTHER - 10 404 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo06g1627 404 PANTHER GROWTH-REGULATING FACTOR 3 10 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1627 Amo-Chr6 54629878 54632562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1627 1 391 GRF Transcription Factor Family AT2G36400 49.766 1.85e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo06g1627 WRC 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1627 - - aip:107648821 715.687