Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1597 ATGCGTTCCAACAACACTTCTTCTTCTTCTTCTTCAGGCAGTAGTGGCACTGGTCGGCACCCTTTGTACCGAGGAGTGAGGCGCAGGAGCAGTGGCAAATGGGTCTCCGAAATCAGGGAGCCAAAGAAACCTACCAGGATTTGGCTTGGCACTTTCTCCAACCCCGAAATGGCTGCTATTGCTTATGATGTCGCCGCTCTTGCTCTTAAGGGTAACGATGCTGCCCTTAACTTCCCCGACTCCGCTTCTTCCCTCCCTGTTCCTGCCTCTTCCTCTGCCCGCGATATTCAAGTTGCCGCAGCCAGTGCCGCTGCTGCTCTCGGAGCCGCCAAAGACTCCATCGAGGGAAGCCGGGGAGCCGTGGCAGGGAATGCCGTTGCGCTGGAGCAAGAGTTGCCGCTCTCCCAAGCCAGGAACACTATTGACAACAATAATGAGTTTGTGGATGAGGATTTGATTTTTGATATGCCTAATGTTCTTCTCAATATGGCTGAAGGGATGCTTCTTAGCCCTCCTCGTTTTCATGTTGCCGATGACTACACTACTGCTCCAGAATACGTGCCGGAAGATCCACACCTCTGGAGTTACCCTTATTTCCCATGA 603 0.5274 MRSNNTSSSSSSGSSGTGRHPLYRGVRRRSSGKWVSEIREPKKPTRIWLGTFSNPEMAAIAYDVAALALKGNDAALNFPDSASSLPVPASSSARDIQVAAASAAAALGAAKDSIEGSRGAVAGNAVALEQELPLSQARNTIDNNNEFVDEDLIFDMPNVLLNMAEGMLLSPPRFHVADDYTTAPEYVPEDPHLWSYPYFP* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1597 200 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Amo06g1597 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 197 - -
Amo06g1597 200 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Amo06g1597 200 MobiDBLite consensus disorder prediction 1 36 - -
Amo06g1597 200 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Amo06g1597 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 197 - -
Amo06g1597 200 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Amo06g1597 200 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Amo06g1597 200 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Amo06g1597 200 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Amo06g1597 200 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Amo06g1597 200 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1597 Amo-Chr6 51529243 51529845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1597 18 197 AP2-EREBP Transcription Factor Family AT2G36450 63.536 1.97e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo06g1597 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1597 - - gmx:100799620 239.965