Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1571 CGGAAAATAGAATCCGTCGATAAAGGTGTATGCGGACCGCATGTCCCAACCATCTCGTGTCGTTCTTATCTTCTGCAAAAACTCCCTGCTATTGTTGATGGAAGGTTCAAGCTATTCAAGAGTCACGCAATTCTTATCTATCTTGCTTCTGCCTTTCCTGGTATTGCTGATCATTGGTTAGATGTATGGTGTGGCCCTGGAATTGGACTCGCATCAGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTAAGAGAGCAACACATAGGGAAGAGCCTCTTCTCTTCCTCAACTCAATGACAGTTCTTGATTGTTTAATTGATCAAAGACTGTACATTGGTTTACCTGATGCGAAGCAAAAAGTCGAAATTTTTGGTGTGCATAGTTTTGGAAAGCAACATGCAGAGGATGTTGATTTTGAAAAGCTTGTCTTCCAAACTGTTGGATTCTCAGGAGCAGATATAAGAAACCTTGTCAATGAAGCAGCAATAATGATGAGACTACTTGCTGTTCATGAAGCTGGTCATGTTGTGTTAGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCGCAACTCCTGCCTGGTGGTAAGGGGATCTCAGATGCAAGACAACTTAATGAGAGAACTGGTAAATGA 681 0.4244 RKIESVDKGVCGPHVPTISCRSYLLQKLPAIVDGRFKLFKSHAILIYLASAFPGIADHWLDVWCGPGIGLASDHASASVDCVVARKNASSRRNLDAVKRATHREEPLLFLNSMTVLDCLIDQRLYIGLPDAKQKVEIFGVHSFGKQHAEDVDFEKLVFQTVGFSGADIRNLVNEAAIMMRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKGISDARQLNERTGK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1571 226 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 119 178 - -
Amo06g1571 226 Gene3D - 130 182 - -
Amo06g1571 226 PANTHER ATP-DEPENDENT PROTEASE 119 178 - -
Amo06g1571 226 Pfam AAA+ lid domain 150 184 IPR041569 -
Amo06g1571 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 56 IPR004045 -
Amo06g1571 226 SUPERFAMILY FtsH protease domain-like 179 212 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo06g1571 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 181 IPR027417 -
Amo06g1571 226 Gene3D Glutaredoxin 24 59 - -
Amo06g1571 226 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 180 213 - -
Amo06g1571 226 Gene3D Peptidase M41 183 225 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo06g1571 226 SUPERFAMILY Thioredoxin-like 23 52 IPR036249 -
Amo06g1571 226 PANTHER ATP-DEPENDENT PROTEASE 180 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1571 Amo-Chr6 49993853 49996448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1571 25 59 Glutathione S-transferase Gene Family AT5G41210 80.000 4.18e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1571 K03798 - tcc:18594886 152.525