Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1569 ATGAACATGGAGAGCACGCGTAGATCGTTCGATAGATCGAGAGAGCCGGGCGCCAAGAAGCCCCGATTGATCGACGAGCTCGACAGCAACCACCCACATCTCCTCTTGAACTATACCTTAAAAAAAATGATTCAAAATTCCAAAGAAGCCTTATATCATCTGTATAATTTAGTCATACATACCTCTTTATATCATATGTCAGGAGTAGCTAATGATACGACTAGAGCTATTTTGAACTCAAATGAGGATTCAGAGAGGTCAAGTAGAGTTTTGGGTGCTTACCGACCGTGGCTAGATCCTAGGATTAACATGCATATTGGAACAACTGGCAGTAGGGTTACTGAGCTGGGACATGATAAAACTTGGTATAAAGCAGGAATCAGCGTGGCAGAGAACACGTCTAATCAAAGTAATGGTTTCAGTTTGAAGCTTGGTTTTTCGAATCGTGAAGCACCAAAGTCGATGAACTTGGGTGCACATCATCAGCCAACACAAAACTTAACTAGCATACAGAGCAGTGTAGTGCCAGGTAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGATGAAATGAACTCTGGAATGATTGGTGATGGTGCAGCCAGCATTGCCAACAACATGAATACGAACCATGGATGGGATGGAGATCAATCCCAAATCTTGCACCATGATAGAGAAATATCTACTGCTAGGAAACAATCATTTGCATCTGGGGGGCATTCATCATTGCCATGTCACTCGGAAAAATTGTTGTCAGCTTTAGGTTGCTTACCAGCTAATACAAGTTCTTTGGTTGTCAGGATGCCAAATCAGTCTTCCATGCCAAATGCAACCAAAGATATGTCTGAAACTATGGGACAAAAGCAATTTGATTCCATGGGAACAAAACCCACTTCTGTGCAGTCACCTTTGCAGCAGCAGTCTGCATCATTGCCTGTAACAAAGCTCCACCTTCATCCAAACAAAATTTGTTGGAGCAGACAATGGAAGGCTTCTAAAACATCACAATTTCTGGGAGATCTGCAGAGACAATACATTAGAGATCAACCAGCTGCCCTTCCTCCCAATGCTCAAGTTGGTCGTTTGCATAGATCTAGAGAAAAGGATTTGCATGGTCCTTTATCTTCAGAGACTTCTTTTCTGCCAAGGCATCAGCAGCAGCCACTGGTCTCTTCCCAGACTGAAGTTATTGCAAAAACTAAGCCTCTCCACTCTAAAGTCTCTTTGGCCAGTGAAGTTCAGAACAATCAAAAACATGTGTCAGCTCCAACCTCAACCGCTAGAAAAAACAATTCCTTGAATCCCATTGCAAACCTTTTAAGCTCACTGGTTGCAAAAGGTTTGATATCTACAGATTCGGAGTCATCGACTAAGGTACCAACAGAGGCATTGGTTCAATTGGAAGCCCGTACTGAAAGCATTACTGCCAGTAGCTCATTGCCAGTTCCTTCAGTTACTGGTTCCACAGTTCTCCCAGTAACATCCTCTAAAGTTGTGGAAGATGATGCAAAAGCCTCCCTGATCCCTGATATAGTTCGAGAGATGCATCCCACTGTAATCAAGGGATTATTGGATGATAGTCAGCATCATTGCAGATTTTGTGGTATTAAGCTTAAACAGGAAGAACAGTTCAACAAACACTTGGAGTGGCATTTTGCACGAGAAAGAGAGCAACATGGTCTAATTAAGCATCCAGAAAATGGTATGAGAATTGATTGTGTATGTCAAGAGAGGGATGAATGGATGTTCAAAAAAGTGGGGCCAATTGTTCATGCTAAATGTTTATCTGAGAACTCAGTAGCTGGCGGCATCAAGATGGTAAGCCTTATGGAATGGATCTGTCAT 1848 0.4253 MNMESTRRSFDRSREPGAKKPRLIDELDSNHPHLLLNYTLKKMIQNSKEALYHLYNLVIHTSLYHMSGVANDTTRAILNSNEDSERSSRVLGAYRPWLDPRINMHIGTTGSRVTELGHDKTWYKAGISVAENTSNQSNGFSLKLGFSNREAPKSMNLGAHHQPTQNLTSIQSSVVPGSWKNSEEEEFMWDEMNSGMIGDGAASIANNMNTNHGWDGDQSQILHHDREISTARKQSFASGGHSSLPCHSEKLLSALGCLPANTSSLVVRMPNQSSMPNATKDMSETMGQKQFDSMGTKPTSVQSPLQQQSASLPVTKLHLHPNKICWSRQWKASKTSQFLGDLQRQYIRDQPAALPPNAQVGRLHRSREKDLHGPLSSETSFLPRHQQQPLVSSQTEVIAKTKPLHSKVSLASEVQNNQKHVSAPTSTARKNNSLNPIANLLSSLVAKGLISTDSESSTKVPTEALVQLEARTESITASSSLPVPSVTGSTVLPVTSSKVVEDDAKASLIPDIVREMHPTVIKGLLDDSQHHCRFCGIKLKQEEQFNKHLEWHFAREREQHGLIKHPENGMRIDCVCQERDEWMFKKVGPIVHAKCLSENSVAGGIKMVSLMEWICH 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1569 616 MobiDBLite consensus disorder prediction 355 388 - -
Amo06g1569 616 ProSitePatterns Zinc finger C2H2 type domain signature. 532 552 IPR013087 -
Amo06g1569 616 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 30 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo06g1569 616 MobiDBLite consensus disorder prediction 1 25 - -
Amo06g1569 616 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 242 417 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo06g1569 616 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 421 564 - -
Amo06g1569 616 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 102 225 - -
Amo06g1569 616 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 421 564 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo06g1569 616 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 102 225 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo06g1569 616 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 242 417 - -
Amo06g1569 616 MobiDBLite consensus disorder prediction 271 301 - -
Amo06g1569 616 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1569 Amo-Chr6 49654431 49658343 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1569 K14400 - gmx:102662278 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g1569 06 49654431 49658343 Amo12g3451 12 123683361 123690031 PCT
Amo12g3451 12 123683361 123690031 Amo06g1569 06 49654431 49658343 PCT