Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1552 ATGACTTGGAAAGAATTGAACGAGGAGCCGTATGCGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCTAAAAAACCAAACTCTGCCTTACGTAAAGTTGTCAGAGTACGCTTAACCTCTGAATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTATAGTCTTAGTAAGAGGGGGAAGGGTTAAGAATTTACCCGGTGGGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCAGAGTAAAGGATCGTCAACAAGCCCTTAGAAGTTATAAAAAAACAGATTATCCCTTCACGCTCATGTCACGGCGAGGTGCTGTAGAAGAAAAAACCGCAAAATTGGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTTTGAAACATGGAAAAAAATCATTGGCTTATCAAATTATTTATCGAGCTATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTATTTTACATCAAGCAATACGTGGAGTAACTCCCGATATAGTAGTAAAAGCAAGACGTGTAGGCGGATCTACTCATCAAGTTCTCATTGAAATAGGATCCACACAAGGAAAGGCACTTGCCATTCGTTGGTTATTAGGGGCATCCAGAAAATGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCAAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTACATATTTTCGTTAA 792 0.3914 MTWKELNEEPYAGDLSVNFSTITPKKPNSALRKVVRVRLTSEFEITAYIPGIGHNLQEHSIVLVRGGRVKNLPGGRYHIVRGTLDAVRVKDRQQALRSYKKTDYPFTLMSRRGAVEEKTAKLDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSILHQAIRGVTPDIVVKARRVGGSTHQVLIEIGSTQGKALAIRWLLGASRKCPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFTYFR* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1552 263 TIGRFAM rpsG_bact: ribosomal protein uS7 111 263 IPR005717 GO:0003735|GO:0006412|GO:0015935
Amo06g1552 263 Pfam Ribosomal protein S12/S23 6 96 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo06g1552 263 Gene3D Ribosomal protein S7 domain 109 263 IPR036823 -
Amo06g1552 263 PANTHER 30S RIBOSOMAL PROTEIN S7, CHLOROPLASTIC 109 263 - -
Amo06g1552 263 PRINTS Ribosomal protein S12 signature 40 59 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo06g1552 263 PRINTS Ribosomal protein S12 signature 24 39 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo06g1552 263 PRINTS Ribosomal protein S12 signature 76 92 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo06g1552 263 PRINTS Ribosomal protein S12 signature 59 76 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo06g1552 263 SUPERFAMILY Ribosomal protein S7 111 257 IPR036823 -
Amo06g1552 263 TIGRFAM rpsL_bact: ribosomal protein uS12 6 99 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo06g1552 263 ProSitePatterns Ribosomal protein S7 signature. 128 154 IPR020606 GO:0003723|GO:0003735|GO:0006412
Amo06g1552 263 Gene3D - 2 106 IPR012340 -
Amo06g1552 263 Hamap 30S ribosomal protein S7 [rpsG]. 109 263 IPR005717 GO:0003735|GO:0006412|GO:0015935
Amo06g1552 263 ProSitePatterns Ribosomal protein S12 signature. 25 32 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo06g1552 263 CDD uS7_Chloroplast 118 262 - -
Amo06g1552 263 SUPERFAMILY Nucleic acid-binding proteins 4 99 IPR012340 -
Amo06g1552 263 PANTHER RIBOSOMAL PROTEIN S7 109 263 IPR000235 GO:0006412
Amo06g1552 263 CDD Ribosomal_S12 21 92 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo06g1552 263 Pfam Ribosomal protein S7p/S5e 109 257 IPR023798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1552 Amo-Chr6 47585543 47586960 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1552 129 257 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 34.559 9.13e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1552 K02992 - rcu:125368899 285.804