Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1538 TCAAATAAGGGAAGGAAACAGACCACCCAGGGCAACGAGATTCACAGGTACACTTTGTCACCAAATGGGTTTGTGGAGCCTAGCTACGAATTTTCATCTAAGTTTGACCGAGTCCACGCGTTGCAGGATGCTAATGGTTGGATGAGCGGCGAAACCGTGCTGGTAGAGGAAGCAGAAGCGATGGATTCGTACACCGCAGATGCGGACATAAATGCAGAAGTAGCAGTGAGGATTATTGACGGGATAGGGTCCTTTGGTGCAATTGAATTTTCTTCCCTAACAGCCAAGGACGTGCTGACGACGGAGTTCACAAGCCTACAGGCAGCTTATGACTACTACAACGAATTCGGTTGCATGAAGGGATTTTTGGTCAGGATGTCCAAGGTGGGTCGCATAACAAAGCAGGGGGCGGAGGGCAAAATAATTTGGCAGATATTCGTGTGCTCCAGGGAAGGAGAGCACGACGGGAAACACATGCATCGGGAAGATAGGAAAAAGGATCCTCGACCGATCACGCGGTGCGGGTGTGAAGCCCAAATTAATGTCCACGCTGATGATGCCAGCAGGCGATGGTTTGTTGAACAATTCTGCGATAACCACAATCATCCCATGCTGGATGCGAGGTTTAGGGGTCTGTCGCGGTCACACAGAGCAGTCAAGGAAGGGAATTTGCACTAA 678 0.5 SNKGRKQTTQGNEIHRYTLSPNGFVEPSYEFSSKFDRVHALQDANGWMSGETVLVEEAEAMDSYTADADINAEVAVRIIDGIGSFGAIEFSSLTAKDVLTTEFTSLQAAYDYYNEFGCMKGFLVRMSKVGRITKQGAEGKIIWQIFVCSREGEHDGKHMHREDRKKDPRPITRCGCEAQINVHADDASRRWFVEQFCDNHNHPMLDARFRGLSRSHRAVKEGNLH* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1538 225 Pfam FAR1 DNA-binding domain 111 205 IPR004330 -
Amo06g1538 225 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 74 213 - -
Amo06g1538 225 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 74 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1538 Amo-Chr6 47174937 47176010 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g1538 FAR1 2.5e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1538 - - aip:107633138 343.584